BAC Information

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BAC

Clone NameMSMg01-535K05
Chromosome4 (Build37)
Map Location 132,934,680 - 133,085,134
singlet/doubletdoublet
Overlap geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik
Upstream genePhactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
Downstream geneNudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535K05.T7 (MSMg01no535_k05.b1)MSMg01-535K05.TJ (MSMg01no535_k05.g1)
ACCAG603040AG603041
length762773
length of high quality
(start - end)
662 (47 - 708)553 (76 - 628)
definitionCHROMAT_FILE: MSMg01no535_k05.b1 PHD_FILE: MSMg01no535_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:30 2005CHROMAT_FILE: MSMg01no535_k05.g1 PHD_FILE: MSMg01no535_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,084,476 - 133,085,134)(132,934,680 - 132,935,232)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGAGGAACCTTTGCGACTAGCCAAATCCTTGTGCTTTGGGCCCT
TATTAAGGCCAGACCCGGGAGCTGCTCTGCCAGTTAGTCATAGGGTAGAG
GCGTTTACAGACCCGATTGTTTAAGAGAAGTGCCAGCTGGCTAAGGGGAA
GCCCCACAAAGCCCAATCCTTCTCCTGTAGCTAGAACTTCCCTACTCAGG
CCCACCTACCGTCCTGGCTGAGGCCAGAGCCCAGCATGGTCTCATGGCCA
CTGTCGGGGGCAGCAGCAGGGGCAGTAGAGCGGGCTGAGCGCCCCTCGGA
GGTCTGTGGGCGGGAGCGGCTTTTGCGGGTACTAATACGGATGATGCCCC
GCACCAGGCGGCCCTCGGCGTCTTGCTCATCCAGGTGGTAGTCCTGCGTG
ATGCTGCTGATCAGGTCTGAGATCTTGCTGGTCTTCTCCAGGAACACGGT
GTCCGATGTGCACTTGGCCAGCTCGTCAATCTGGTGCACGCTGAACAGCT
CTGTCAGCTTCTTGAAAATAAGCACGTCGATCTCCCGGCTCGACATGGAG
CCACTGCCCATCTCAGGCAGGTCCAGGTCCGATTCATGGAAGGAGTAGTA
CTCCTCAGAGCCGCGGGGGCTGTTGGTGAAGGTGCTAGGCAAGCTGTGCC
GCGTGGGAGGAGGCTCGGCCAGGGGCTCCTTGCAGCAGGAGTCCACGTCA
GGGACTGGGGAG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAATACTGCTTCCCAGAAAGCAGGA
GCTCCCCAGATCATCCCAGCAAATTCCTGTAAATACATGTCCTCTGGTGT
TCTGACTGAGGGCTAGGGTGAGGAGTTCTGTTCCTTCCCAGGCCTCTCAA
ACTAGAGTGGCTCTTCTGTAATGAGAGGAGTCTGTCTGACATCACAGCTT
TATGTGTGACAGAGCCCAGAAGTTTACCAAACCCAGTCAGTAGCCAGCAC
CACTTGTGTAGCCTTTGCTGCATGCAGGGTAAGGCTTGGGAAGGCTGTGT
CTTTTGTGCTGGCTAGCCTGAAGAAAAGGAGGCAGGAGAGACAGCCGTGG
TAGTCTGCCTGCAGGCTCTTAGCTTGCACTCCTCCATGCACTAGAAAAAG
TAAAACTGGGCCCTGTTCAGCAGGCGCTCGCAGTGTGCTCAGGGCTGGAC
GAGATGAGACAAGACATAATAGATGTGATGTGTCTGAGGGCTGGGCAGAC
TCTTGGCAGAGGGCAAGTTGAGAGGGAGTGGGCAGTCCCTGAGAGCTGCA
GTGGTAGAGGAGGTGAGGTGGGACCTGAGTGGAACCTTGGAGGGAACGAA
AGCAGAGCAACGTGCTGTACTAGAGGCTGACCCCGTCCGTCCATGTGGGC
GAGCATGGGAGCCCCTGGAAGGCAGGGCCTGTGTGCTTGCTTCCTTCTGC
TATCCCTTCCACCCCTGCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_k05.b1 MSMg01no535_k05.b1 CHROMAT_FILE:
MSMg01no535_k05.b1 PHD_FILE: MSMg01no535_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:30 2005
         (662 letters)



>mm_chr4_133084273_133085334
          Length = 1062

 Score = 1259 bits (651), Expect = 0.0
 Identities = 657/659 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgaggaacctttgcgactagccaaatccttgtgctttgggcccttattaaggc 63
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ggaattctgaggaacccttgtgactagccaaatccttgtgctttgggcccttattaaggc 803

                                                                       
Query: 64  cagacccgggagctgctctgccagttagtcatagggtagaggcgtttacagacccgattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cagacccgggagctgctctgccagttagtcatagggtagaggcgtttacagacccgattg 743

                                                                       
Query: 124 tttaagagaagtgccagctggctaaggggaagccccacaaagcccaatccttctcctgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tttaagagaagtgccagctggctaaggggaagccccacaaagcccaatccttctcctgta 683

                                                                       
Query: 184 gctagaacttccctactcaggcccacctaccgtcctggctgaggccagagcccagcatgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gctagaacttccctactcaggcccacctaccgtcctggctgaggccagagcccagcatgg 623

                                                                       
Query: 244 tctcatggccactgtcgggggcagcagcaggggcagtagagcgggctgagcgcccctcgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctcatggccactgtcgggggcagcagcaggggcagtagagcgggctgagcgcccctcgg 563

                                                                       
Query: 304 aggtctgtgggcgggagcggcttttgcgggtactaatacggatgatgccccgcaccaggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggtctgtgggcgggagcggcttttgcgggtactaatacggatgatgccccgcaccaggc 503

                                                                       
Query: 364 ggccctcggcgtcttgctcatccaggtggtagtcctgcgtgatgctgctgatcaggtctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggccctcggcgtcttgctcatccaggtggtagtcctgcgtgatgctgctgatcaggtctg 443

                                                                       
Query: 424 agatcttgctggtcttctccaggaacacggtgtccgatgtgcacttggccagctcgtcaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agatcttgctggtcttctccaggaacacggtgtccgatgtgcacttggccagctcgtcaa 383

                                                                       
Query: 484 tctggtgcacgctgaacagctctgtcagcttcttgaaaataagcacgtcgatctcccggc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctggtgcacgctgaacagctctgtcagcttcttgaaaataagcacgtcgatctcccggc 323

                                                                       
Query: 544 tcgacatggagccactgcccatctcaggcaggtccaggtccgattcatggaaggagtagt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcgacatggagccactgcccatctcaggcaggtccaggtccgattcatggaaggagtagt 263

                                                                      
Query: 604 actcctcagagccgcgggggctgttggtgaaggtgctaggcaagctgtgccgcgtggga 662
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actcctcagagccgcgggggctgttggtgaaggtgctaggcaagctgtgccgcgtggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no535_k05.g1 MSMg01no535_k05.g1 CHROMAT_FILE:
MSMg01no535_k05.g1 PHD_FILE: MSMg01no535_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:30 2005
         (553 letters)



>mm_chr4_132934480_132935432
          Length = 953

 Score = 1069 bits (553), Expect = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatactgcttcccagaaagcaggagctccccagatcatcccagcaaattcctgtaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatactgcttcccagaaagcaggagctccccagatcatcccagcaaattcctgtaaata 260

                                                                       
Query: 61  catgtcctctggtgttctgactgagggctagggtgaggagttctgttccttcccaggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtcctctggtgttctgactgagggctagggtgaggagttctgttccttcccaggcct 320

                                                                       
Query: 121 ctcaaactagagtggctcttctgtaatgagaggagtctgtctgacatcacagctttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaaactagagtggctcttctgtaatgagaggagtctgtctgacatcacagctttatgt 380

                                                                       
Query: 181 gtgacagagcccagaagtttaccaaacccagtcagtagccagcaccacttgtgtagcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgacagagcccagaagtttaccaaacccagtcagtagccagcaccacttgtgtagcctt 440

                                                                       
Query: 241 tgctgcatgcagggtaaggcttgggaaggctgtgtcttttgtgctggctagcctgaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgcatgcagggtaaggcttgggaaggctgtgtcttttgtgctggctagcctgaagaa 500

                                                                       
Query: 301 aaggaggcaggagagacagccgtggtagtctgcctgcaggctcttagcttgcactcctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaggcaggagagacagccgtggtagtctgcctgcaggctcttagcttgcactcctcc 560

                                                                       
Query: 361 atgcactagaaaaagtaaaactgggccctgttcagcaggcgctcgcagtgtgctcagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcactagaaaaagtaaaactgggccctgttcagcaggcgctcgcagtgtgctcagggc 620

                                                                       
Query: 421 tggacgagatgagacaagacataatagatgtgatgtgtctgagggctgggcagactcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggacgagatgagacaagacataatagatgtgatgtgtctgagggctgggcagactcttg 680

                                                                       
Query: 481 gcagagggcaagttgagagggagtgggcagtccctgagagctgcagtggtagaggaggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcagagggcaagttgagagggagtgggcagtccctgagagctgcagtggtagaggaggtg 740

                        
Query: 541 aggtgggacctga 553
           |||||||||||||
Sbjct: 741 aggtgggacctga 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)