BAC Information

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BAC

Clone NameMSMg01-536A03
Chromosome4 (Build37)
Map Location 95,269,449 - 95,269,957
singlet/doubletsinglet
Overlap gene2310009E04Rik
Upstream genePlaa, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536A03.T7 (MSMg01no536_a03.b1)MSMg01-536A03.TJ (MSMg01no536_a03.g1)
ACCAG603324AG603325
length749750
length of high quality
(start - end)
593 (53 - 645)651 (80 - 730)
definitionCHROMAT_FILE: MSMg01no536_a03.b1 PHD_FILE: MSMg01no536_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:59 2005CHROMAT_FILE: MSMg01no536_a03.g1 PHD_FILE: MSMg01no536_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATATCAGAGCACTGGGAAGATGGTCCTGTGTTCATATG
AGTTGATAGTTGTCCAGAGATCTGCAACTTTACCACTATGTACTTGAGAC
CAACAGAAAACAACTTCCAGACAAAATGGTATTATTTTTAACTTCCTAAG
ACCATCTAGGTGCTCCACTTTGGCAGTCCGCACTTCCTCAGGCAGCCTAA
AGGTTCCTAGGATTGGGGGTTACCGTGCTGATACTGAACTTCGTGTGGAC
ACTAGTTTGGCATAGCACACTACAGCCCCAAACTCGTGGACAGTCAACTG
ACCCCTTTTCCTGAGACTCCTGAGTAACTTGTCATTATAGGAACTTACTA
CCACAACTGCCTGTATGTTATTCTTAAAAACACATTTTCCTTTTAACATG
TTTGAGTAAAGATCAAAACACTGATCTTTCTGCTTATTCATGTATCTGAG
AGTGAACTTGAGATTGACAAGGTATTTTGTTTTCTCTCTTTTTGTCAGCT
TGCATAAGGATTCCTTTTTTTTTTTTTTGTGGCTATCATTTCCATCCAGC
CATAGGATTAAAACCAGGGTGGCACTAGGTCAAAAACAGATGCCACAACC
AACAGAATACAATGGACTTCTGAACTAAGCCACAAATCATCTTCAAAAAT
CACACACCCTAAACTCCCAATGGGGAAAAAGTTTCTTCTATAGATGATG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGGATATAGAAACATAGA
GGAGGACTCAGGCTGCAATAAAGATGAAATTGAAAAACCCATAGCTTAAC
TAGAAAAATCAAAGGAAAGCTTTAAAAGTAGAATGAATCAAGCAAAAGAT
AGAATATTATGATTCAAAGACAAAGTAGAGCATCTGGAACAGATTCGAAA
GGAATAAGAAAAAAATTTTAAAAAAAAACCTCGCAAGAAGGAACATAGAG
GTAATGAGCATGGGACTCTGAAAAACAAAAAACAAAACAAAACAAAACAA
AAAAACAACCAAACCTTCAAGCTATGGGCATAGATGAAGGAGAAGAATCC
CAACTTGATGGCATAAACCAGACCTTCAACAAGGTCATAGAAGAAAACTT
GCCAAAACTAAGGACAGACACATCCATACAAATAATGCACATAGGACCCA
AATAGATAAGACCAGAAAAAAGAAAGTAATATACATAGTAATATTACTAA
GTATACAGAACAGAGAGGGTGTACTGAATACTGCAAGAGAGTCTGGGCGG
GGATCCCAAAACCACAAGTCACATATAAAGGAAAACACAACAGGCTAACA
GTCAATTCCCAACGGAAACTTTGAGATGCAGAAGAGCCAATGCACTCCAC
ATCCTGAAATACCACAACAGTCAACTAAAAACAAGATACCCAGCAAAACT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_a03.b1 MSMg01no536_a03.b1 CHROMAT_FILE:
MSMg01no536_a03.b1 PHD_FILE: MSMg01no536_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:59 2005
         (593 letters)



>mm_chr4_95269245_95270237
          Length = 993

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatcagagcactgggaagatggtcctgtgttcatatgagttgatagttgtcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatcagagcactgggaagatggtcctgtgttcatatgagttgatagttgtcca 264

                                                                       
Query: 65  gagatctgcaactttaccactatgtacttgagaccaacagaaaacaacttccagacaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagatctgcaactttaccactatgtacttgagaccaacagaaaacaacttccagacaaaa 324

                                                                       
Query: 125 tggtattatttttaacttcctaagaccatctaggtgctccactttggcagtccgcacttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtattatttttaacttcctaagaccatctaggtgctccactttggcagtccgcacttc 384

                                                                       
Query: 185 ctcaggcagcctaaaggttcctaggattgggggttaccgtgctgatactgaacttcgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaggcagcctaaaggttcctaggattgggggttaccgtgctgatactgaacttcgtgt 444

                                                                       
Query: 245 ggacactagtttggcatagcacactacagccccaaactcgtggacagtcaactgacccct 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggacactaggttggcatagcacactacagccccaaactcgtggacagtcaactgacccct 504

                                                                       
Query: 305 tttcctgagactcctgagtaacttgtcattataggaacttactaccacaactgcctgtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcctgagactcctgagtaacttgtcattataggaacttactaccacaactgcctgtat 564

                                                                       
Query: 365 gttattcttaaaaacacattttccttttaacatgtttgagtaaagatcaaaacactgatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttattcttaaaaacacattttccttttaacatgtttgagtaaagatcaaaacactgatc 624

                                                                       
Query: 425 tttctgcttattcatgtatctgagagtgaacttgagattgacaaggtattttgttttctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttctgcttattcatgtatctgagagtgaacttgagattgacaaggtattttgttttctc 684

                                        
Query: 485 tctttttgtcagcttgcataaggattcct 513
           |||||||||||||||||||||||||||||
Sbjct: 685 tctttttgtcagcttgcataaggattcct 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)