BAC Information

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BAC

Clone NameMSMg01-536L11
Chromosome4 (Build37)
Map Location 96,959,380 - 96,959,792
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536L11.T7 (MSMg01no536_l11.b1)MSMg01-536L11.TJ (MSMg01no536_l11.g1)
ACCAG603861AG603862
length768778
length of high quality
(start - end)		562 (48 - 609)535 (79 - 613)
definitionCHROMAT_FILE: MSMg01no536_l11.b1 PHD_FILE: MSMg01no536_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:54 2005CHROMAT_FILE: MSMg01no536_l11.g1 PHD_FILE: MSMg01no536_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACATCTCTGCTCTGTTGTAAGAAACTACTAATCACTCTGACT
GGTAGTTCAGATCCAGCATACCTATTTGTGCATTCTTTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTACATATGTTCCTGTGTGTACAAGCACATATGT
GACGGCCAGAGGAAATGTCCACCTTCTTCTTATTTATGGATTCTGCTCAG
GCAGGACATCTCACTAGCCTGGAGCTTTCTAAGGATGCTAGGCTGTCTGG
CTGGCCACCAAGCCCCAGGGTTCTCCCTGTTACTGATACTCAAAGGTGAT
ATTGCAAGTATGTGCCACCATGGCAGGCCTTTTACATGAATTCTGGCAAC
CATTACTAATTGAACCATTTCCCAACTCCCAACACATATGTATTCTAATA
CCCTGCCACACACCAGTCTCTAGGGTCCCTTTTCCATATGTAGCACCTCG
ATGAGATACTGCCGAGTTATGAGTAGATATTGACTCCTCATTTAAATTGG
GAAAACTGAAGGTGATAAAAGTGAAGAGCAATGCTCATTGTTAAAAATCC
CAAAAGTAGAAGAAATGAGGTTTAAAAACACATCTAAAGGACTTTCTGTC
CAGTGGCCTTTTTTTTTCTTTCAAATATAGATGCTTATTTTTTTTAAATA
TTTTTTACTCGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAG
TTCCCCAGACACCCCCCN

CCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTATATTAGACATGTGTTG
TTGTCCGTGCGTCCTGCCCTGAAGAGGGCTTTGAATAACCAGTGAGACTC
TATTGGAGAAAATTAATTCTTCACGTGTGAGTGGTTGTCAATTGAAGCTA
AATTATGAAATATAGGTAGGGGTATGTATCTATTTTCCCTCTCAGTCCTG
GGACTCCATCTGGCCCAGACCTATGCAGGCCTTATGCATACTGCCACAGT
CTTTGTGAGTTCATACATGCACTAATCCTTTTGTGTTTAGAAAGCCTTGT
TTCCCTGGTCCTCCATCACATCTGCCTCTTACAGGCTTTCGACTTCCTCT
TCCACAGACTTCCCTTAGCACTTAGAAGAAGGGATTTGATAAAGATACAT
CGTATAGGACTTAGTCTTTCATGGGCTCTTATGCCCTATATGTTGTCTCG
ATACATGTCTTTATTTGTTCATATTGAGAGAAACAAAGAGGAACTATAGG
AAGAATCATCTCTGACGATGGCTGACCAAGACACTGATCAATGAGTGTAG
CACACTGTCATTGAAGTCAATTTCAATTTATTTGCAAATTTCTTTAGTGG
TACAGTAGTATTTTATTTTCCCCTTTGCCCCTGGCCTTTCTAGTTTCATG
TTCTTGGCAACCTGAGAAAAATCAAGTTGAAATTCATTTCATGGAGGATG
CCTGAAATCAATCCTCCATTGGTTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_l11.b1 MSMg01no536_l11.b1 CHROMAT_FILE:
MSMg01no536_l11.b1 PHD_FILE: MSMg01no536_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:54 2005
         (562 letters)



>mm_chr4_96958831_96959792
          Length = 962

 Score =  706 bits (365), Expect = 0.0
 Identities = 401/413 (97%)
 Strand = Plus / Minus

                                                                       
Query: 150 atgtgacggccagaggaaatgtccaccttcttcttatttatggattctgctcaggcagga 209
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 atgtgaaggccagaggaaatgtccaccttcttcttatttatggattctgctcaggcagga 903

                                                                       
Query: 210 catctcactagcctggagctttctaaggatgctaggctgtctggctggccaccaagcccc 269
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 902 catctcactggcctggagctttctaaggatgctaggctgtctggttggccaccaagcccc 843

                                                                       
Query: 270 agggttctccctgttactgatactcaaaggtgatattgcaagtatgtgccaccatggcag 329
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 842 agggttctccctgttactgatactcaaaggtgatattgcaagtatgtgccactatggcag 783

                                                                       
Query: 330 gccttttacatgaattctggcaaccattactaattgaaccatttcccaactcccaacaca 389
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gccttttacatgtattctgtcaaccattactaattgaaccatttcccaactcccaacaca 723

                                                                       
Query: 390 tatgtattctaataccctgccacacaccagtctctagggtcccttttccatatgtagcac 449
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 722 tatgtattctaataccctgccacacaccggtctctaaggtcccttttccatatgtagcac 663

                                                                       
Query: 450 ctcgatgagatactgccgagttatgagtagatattgactcctcatttaaattgggaaaac 509
           |||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 662 ctcgatgagatactgctgagttatgagtagatattgacacctcatttaaaatgggaaaac 603

                                                                
Query: 510 tgaaggtgataaaagtgaagagcaatgctcattgttaaaaatcccaaaagtag 562
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgagggtgataaaagtgaagagcaatgctcattgttaaaaatcccaaaagtag 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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