BAC Information

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BAC

Clone NameMSMg01-537D14
Chromosome4 (Build37)
Map Location 125,894,781 - 126,075,986
singlet/doubletdoublet
Overlap geneMtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3
Upstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3
Downstream geneEif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537D14.T7 (MSMg01no537_d14.b1)MSMg01-537D14.TJ (MSMg01no537_d14.g1)
ACCAG604246AG604247
length736737
length of high quality
(start - end)		655 (82 - 736)628 (81 - 708)
definitionCHROMAT_FILE: MSMg01no537_d14.b1 PHD_FILE: MSMg01no537_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:32 2005CHROMAT_FILE: MSMg01no537_d14.g1 PHD_FILE: MSMg01no537_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,894,781 - 125,895,435)(126,075,359 - 126,075,986)
sequence
TCTTGAGCCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAAA
TCCGCGGAATTCTCTCCCTTTCCTGCAATAGTTTAACTTTGTAGGTAGGA
GTCAGTGTTAGAGCAGTTTGGTATCAATGGTTCTAGGGGTAGAACTTGGA
AACTTGCTTGCTGCAGCTCCATTCCTATCTTTCTGTCTCCAGCCCAGCCA
CTTCCCTTCCCTGGTGGCATCTATCTCTCCTTCCCACAGTCAGTTTTCTG
AAGTTTCTTATCATGAGGGAGAGAATGCAAGCTTCCTAACTTAACAGGAC
ACAGAGCACTGGGCGCATGACCCCTGCCTCGCTTCTAGCATACAGGACAA
CATCTTCCCCTTTCACCATGCATGGTGGAAACAGCCTCTGAGTTTCCCAG
ACTCTGCAGCCTCTTCTGGCTACCTCTGTGTTGCTCATGTTTCTCGCCTG
TCCTTTATTGCACAGGACCTACTGCATGCCAGCCCTGGGATGGGCAGGAC
GATGTGGGTTGCCCGGCTGGAGCATTTCTGCCGCTATGACTCACGCTCTG
GCAGGAGAGCATTGCTGGGCAAACAGTGACAAGGAGGTGCTTGTCCTAGG
GTGATCCAGAACCCTGGTAAAAGGGGGCCTCTGGGAAAAAGGGTGAGTTA
AGATTTGAACCAATGGGGGGAGGGTATGGGGGGCTTTTGGGATAGCATTG
GAAATGTAAATGAGGAAAATACTTAATTAAAAAAAA

NATTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACTTTGAATAATTTTTT
CAAGTGATTTTTCTTGACTTTTTATGTTACAGTCATGTGGTCTACACATA
GTAACAGGTTTACCTTTATTTTTTCTTGTCATATCATAGTGACTAATTTA
GATGCAGTTGTAGCAAAGAGCATTGATTATCTTCTTTTTATTCTTCATTT
TAGGAAAAACATTTCCAGTGTGTCTCTAATAAATTCTATGCACACATGCA
TGTTTTTTTACTATTGTTAGGGCTATTGTTCTATTACTGTTAATGAGGAT
TGCTGTCTGATTTTCATAAGTACTTTAATCAAAAATGTATGTAAAGGGCT
GCAGAGATGGCCCCTTTATAAGAACATGTCTTTGTTCTTCAGCAGACTGT
TACTCCATTTCCAGCAGTCTTGTCAGCCCCTCATGACCACTGGACCTTCA
TCTTCAGGAACTCCAGAGCCTCTGTAGCCACATGTGTGCACACACCGTCA
CACACACAGAATATATGTTAAATTTTGCTGTATGCCTTTTTAGTGTTTAT
AGAGCAACTGATGACAACAGTTCTTTTTTACAAACATTAAGACATTCCTA
GCCTCTTTTACTGTAACTAGACTGTTTACTAATGCTTTACTTTTTAAATT
GAAATGTCTAAGCAAGATTCACATGGCTTCTTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_d14.b1 MSMg01no537_d14.b1 CHROMAT_FILE:
MSMg01no537_d14.b1 PHD_FILE: MSMg01no537_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:32 2005
         (655 letters)



>mm_chr4_125894581_125895635
          Length = 1055

 Score = 1228 bits (635), Expect = 0.0
 Identities = 650/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaactttgtaggtaggagtcagtgttagagcagtttggtatcaatggttctaggggta 60
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 201 tttaactttgtaggtaggagtcagtgttagagcagcttggtatcgatggttctaggggta 260

                                                                       
Query: 61  gaacttggaaacttgcttgctgcagctccattcctatctttctgtctccagcccagccac 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gaacttggaaacttgcttgctgcagctccattcctatcttcctgtctccagcccagccac 320

                                                                       
Query: 121 ttcccttccctggtggcatctatctctccttcccacagtcagttttctgaagtttcttat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcccttccatggtggcatctatctctccttcccacagtcagttttctgaagtttcttat 380

                                                                       
Query: 181 catgagggagagaatgcaagcttcctaacttaacaggacacagagcactgggcgcatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgagggagagaatgcaagcttcctaacttaacaggacacagagcactgggcgcatgac 440

                                                                       
Query: 241 ccctgcctcgcttctagcatacaggacaacatcttcccctttcaccatgcatggtggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgcctcgcttctagcatacaggacaacatcttcccctttcaccatgcatggtggaaa 500

                                                                       
Query: 301 cagcctctgagtttcccagactctgcagcctcttctggctacctctgtgttgctcatgtt 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcctctgagtttcccaggctctgcagcctcttctggctacctctgtgttgctcatgtt 560

                                                                       
Query: 361 tctcgcctgtcctttattgcacaggacctactgcatgccagccctgggatgggcaggacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcgcctgtcctttattgcacaggacctactgcatgccagccctgggatgggcaggacg 620

                                                                       
Query: 421 atgtgggttgcccggctggagcatttctgccgctatgactcacgctctggcaggagagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtgggttgcccggctggagcatttctgccgctatgactcacgctctggcaggagagca 680

                                                                       
Query: 481 ttgctgggcaaacagtgacaaggaggtgcttgtcctagggtgatccagaaccctggtaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgctgggcaaacagtgacaaggaggtgcttgtcctagggtgatccagaaccctggtaaa 740

                                                                       
Query: 541 agggggcctctgggaaaaagggtgagttaagatttgaaccaatggggggagggtatgggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggggcctctgggaaaaagggtgagttaagatttgaaccaatggggggagggtatgggg 800

                                                                  
Query: 601 ggcttttgggatagcattggaaatgtaaatgaggaaaatacttaattaaaaaaaa 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcttttgggatagcattggaaatgtaaatgaggaaaatacttaattaaaaaaaa 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_d14.g1 MSMg01no537_d14.g1 CHROMAT_FILE:
MSMg01no537_d14.g1 PHD_FILE: MSMg01no537_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:32 2005
         (628 letters)



>mm_chr4_126075159_126076186
          Length = 1028

 Score = 1191 bits (616), Expect = 0.0
 Identities = 625/628 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catactttgaataattttttcaagtgatttttcttgactttttatgttacagtcatgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 catactttgaataattttttcaagtgatttttcttgactttttatgttacagtcatgtgg 769

                                                                       
Query: 61  tctacacatagtaacaggtttacctttattttttcttgtcatatcatagtgactaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tctacacatagtaacaggtttacctttattttttcttgtcatatcatagtgactaattta 709

                                                                       
Query: 121 gatgcagttgtagcaaagagcattgattatcttctttttattcttcattttaggaaaaac 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 708 gatgcagttgtagcaaagagcaatgattatcttctttttattcttcattttaggaaaaac 649

                                                                       
Query: 181 atttccagtgtgtctctaataaattctatgcacacatgcatgtttttttactattgttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atttccagtgtgtctctaataaattctatgcacacatgcatgtttttttactattgttag 589

                                                                       
Query: 241 ggctattgttctattactgttaatgaggattgctgtctgattttcataagtactttaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggctattgttctattactgttaatgaggattgctgtctgattttcataagtactttaatc 529

                                                                       
Query: 301 aaaaatgtatgtaaagggctgcagagatggcccctttataagaacatgtctttgttcttc 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaaaatgtatgtaaaggactgcagagatggcccctttataagaacatgtctttgttcttc 469

                                                                       
Query: 361 agcagactgttactccatttccagcagtcttgtcagcccctcatgaccactggaccttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agcagactgttactccatttccagcagtcttgtcagcccctcatgaccactggaccttca 409

                                                                       
Query: 421 tcttcaggaactccagagcctctgtagccacatgtgtgcacacaccgtcacacacacaga 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 408 tcttcaggaactccagagcctctgtagccacatgcgtgcacacaccgtcacacacacaga 349

                                                                       
Query: 481 atatatgttaaattttgctgtatgcctttttagtgtttatagagcaactgatgacaacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atatatgttaaattttgctgtatgcctttttagtgtttatagagcaactgatgacaacag 289

                                                                       
Query: 541 ttcttttttacaaacattaagacattcctagcctcttttactgtaactagactgtttact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttcttttttacaaacattaagacattcctagcctcttttactgtaactagactgtttact 229

                                       
Query: 601 aatgctttactttttaaattgaaatgtc 628
           ||||||||||||||||||||||||||||
Sbjct: 228 aatgctttactttttaaattgaaatgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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