Query= MSMg01no537_f08.b1 MSMg01no537_f08.b1 CHROMAT_FILE:
MSMg01no537_f08.b1 PHD_FILE: MSMg01no537_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:41 2005
(675 letters)
>mm_chr4_6344650_6345719
Length = 1070
Score = 1149 bits (594), Expect = 0.0
Identities = 652/672 (97%), Gaps = 7/672 (1%)
Strand = Plus / Minus
Query: 5 gaattctatgatgaagacgtcagctttttggtcaatagtctgaagctggatctgggaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gaattctatgatgaagacgtcagctttttggtcaatagtctgaagctggatctgggaaag 811
Query: 65 agacaaggcgggcagatggttgatgacgtggaacttccagcctgggcctcaagtgagtgc 124
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 810 agacaaggcgggcagatggttgatgacgtggaccttccagcctgggcctcaagtga--gc 753
Query: 125 ctcctgagcatgccaagtgcagtgcggttgtgctattatctgttgtggggtgttgcttgt 184
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 752 ctcctgagcgtgccaagtgcagtgcggttgtgctgttatctgttgtggggtggtgcttgg 693
Query: 185 gagttttaaatatacctacctaatttaactagaatctgtctatcccagccagaagtgtgc 244
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gagttttaaatattcctacctcatttaactagaatctgtctatcccagccagaagtgtgc 633
Query: 245 tgagtctacattacaaggagattgatatatatatatgacaagtctaaatgttgtaaaaat 304
|||||||||||| ||||||||||||||||||| | ||||| ||| |||||||||||||||
Sbjct: 632 tgagtctacattgcaaggagattgatatatat-t-tgacaggtccaaatgttgtaaaaat 575
Query: 305 ggttcctgccacttttttttagaaaaaaaaaatatgtaagatgaagaataaaagtcatta 364
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggttcctgccac-tttttttag-aaaaaaaaatatgtaagatgaagaataaaagtcatta 517
Query: 365 gaaatatgtatatctttaaaagg-aaaaaacatagaagcatgcatgtctttccgagtttt 423
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 516 gaaatatgtatatctttaaaaggaaaaaaacatagaagtatgcatgtctttccaagtttt 457
Query: 424 atacacacatggataagtataagaaatgaaagaaaatacaacaaagatggcctaaaattc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atacacacatggataagtataagaaatgaaagaaaatacaacaaagatggcctaaaattc 397
Query: 484 tggtgacgtctcctctgacaggtccccaagacttcctgcagaagaacaaggatgccttgg 543
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgatgacgtctcctctgacaggtccccaagacttcctgcagaagaacaaggatgccttgg 337
Query: 544 aaagcggttacgtgtctgagcaccttcatgagtggattgatctgatatttggctataagc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaagcggttacgtgtctgagcaccttcatgagtggattgatctgatatttggctataagc 277
Query: 604 aaaaagggagtgaggccataggggcccataacggtatgtgatattggctgacatttcact 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaaagggagtgaggccataggggcccataacggtatgtgatattggctgacatttcact 217
Query: 664 tactgtcatgtg 675
||||||||||||
Sbjct: 216 tactgtcatgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1070
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1060
Effective search space: 704900
Effective search space used: 704900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_f08.g1 MSMg01no537_f08.g1 CHROMAT_FILE:
MSMg01no537_f08.g1 PHD_FILE: MSMg01no537_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:41 2005
(660 letters)
>mm_chr4_6183487_6184546
Length = 1060
Score = 1210 bits (626), Expect = 0.0
Identities = 653/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Plus
Query: 1 attattgtttctatgtttaataatgtattttaaaagtgctaagggactataatgtgacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 attattgtttctatgtttaataatgtattttaaaagtgctaagggactataatgtgacca 256
Query: 61 tgtccacctagcttgcatattttggataaatttcagcataggaatgctggagtattttca 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 257 tgtccacctatcttgcatattttggataaatttcagcataggaatgctggagtattctca 316
Query: 121 agtacaagctagaaaactctgtaagttgttgccctaggttg----ttttttttttctatg 176
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 317 agtacaagctagaaaactctgtaagttgttgccctaggttgttttttttttttttctatg 376
Query: 177 tgtatgagtattttgcttcatgagcatacgtccactatgtacgggcctcatgtccctaca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtatgagtattttgcttcatgagcatacgtccactatgtacgggcctcatgtccctaca 436
Query: 237 aagtccagcagagcctgttgaagtctctagaaccaggattatgaatggttgtgaggtgcc 296
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 437 aagtccagcagagcctgttgaagtctctagaaccagggttatgaatggttgtgaggtgcc 496
Query: 297 ttatgggtattaagaatcatcaggtgttctagaaaggtagcaaatgttctaaaacactga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttatgggtattaagaatcatcaggtgttctagaaaggtagcaaatgttctaaaacactga 556
Query: 357 gccatctttccagatactgagctgctttttctgtttctttctttctttttctaagtctat 416
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 557 gccatcttttcagatactgagctgctttttttgtttgtttctttctttttctaagtctat 616
Query: 417 gtttctcagatgcaggacagtctcatagaaccctccttttagtattggttgtgtgcagtt 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 gtttctcagatgcaggacagtctcatagaatcctccttttagtattggttgtgtgcagtt 676
Query: 477 ctgaccatgcagaaaggcccccagcacccattacttagtgtagtaagttggggttgaggg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgaccatgcagaaaggcccccagcacccattacttagtgtagtaagttggggttgaggg 736
Query: 537 ctttatatatgtgaattaggcctaagccttgaaagcacctggtcatcccaaatcagcatc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctttatatatgtgaattaggcctaagccttgaaagcacctggtcatcccaaatcagcatc 796
Query: 597 ttaagttagctttctgtggaaggcatgtttcagagggcaatcaatgtttgggtgctatgt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttaagttagctttctgtggaaggcatgtttcagagggcaatcaatgtttgggtgctatgt 856
Query: 657 atga 660
||||
Sbjct: 857 atga 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
