BAC Information

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BAC

Clone NameMSMg01-537J02
Chromosome4 (Build37)
Map Location 14,785,454 - 14,960,295
singlet/doubletdoublet
Overlap geneTmem55a, OTTMUSG00000004551, Efcbp1
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537J02.T7 (MSMg01no537_j02.b1)MSMg01-537J02.TJ (MSMg01no537_j02.g1)
ACCAG604509AG604510
length743751
length of high quality
(start - end)		672 (49 - 720)613 (82 - 694)
definitionCHROMAT_FILE: MSMg01no537_j02.b1 PHD_FILE: MSMg01no537_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:58 2005CHROMAT_FILE: MSMg01no537_j02.g1 PHD_FILE: MSMg01no537_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,785,454 - 14,786,121)(14,959,901 - 14,960,295)
sequence
NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCATGTTAGTTCCTTTAAGGACTTTCAAAACATAATATGGA
CACAGCAAAATTTCATTAGTTGGAATTTAATTGTCTTTTCCTAAAGTGGG
ACACAGACCATTGTAAATAAAGGGTAAACAGTCGTATAACTGTACAATGG
CTTTCAACAATCCCATCTTCTTATGTTCCATGCCCCTTTGCGATGTGATT
GCTGGTCCTCCCACCAAGAAACAGTGCCTATTCCTCCACTGGCCTTGTAA
CTTCAAAGAGGAAGGGTGATCACTAGTTGTCCAACCGAGAGTCAAAGGTA
GGATTCGAAAGCCGCTGACAGCCAAAGTGTGTTGTAAAAGTGACAGTGTT
GGAAACTGCACTCTCACCATGGCTTCCTCTTGGAGTAGAGCTTTAATACT
AGAAGGCACATAAGGATTGTGAGGAGATGTCCATCCACCTCAGATGTCCT
AGCTGAAACCAGCTATAAGCAAACTTTCCAGCTAAGCTTAGCTGGCTAAG
TTGATGCAAGTCTAGTCACCTAATCAACCTACAGACAATTATGTGCAACC
AGTCACATTGTGTAAAGCAACTGGCTTTGGATGTGCTTTGCTATGTAGCA
AATAACTAGGGTGGCAGTCCAGTTACACTATACGTCACATTGCTTGTGTG
AGCAAAACCTCTCATTATAGCTGATGCATTAGCTTCTCTTGTG

TTTCTCTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTCATTTTGATTTGCA
TTTCCCTGGTAACTAAGAACTTTGAACATTTCTTTAAGTGCTTCTCAGCC
ATTTGAGAATCCTCTGTTGTGAATTTTCTGTTTAGTTCTATATACCGTTT
TTTTGATTGGGTTTTTGACAGGACTTTAGGCACCACCCACAGACTTTAGG
AACCGCCCACACTTCTTTAGGTCCTGCCCACAGACTTTAGGCACTGCACA
CAGACTTTAGGCACCACCCACAGACTTTGGTAATGCCTTCTATGGGTGTT
TTGTTCCCTATTCTAAGGAGGAATGAAGTATCCACACTTTGGTCTTCCTT
CTTCTTGATTTTCTTGTGTTTTGCAAATTATATCTTGGGTATTCTAAGTT
TCTGGGCTAATATCCACTTATCAGTGAATGCATATCAAGGATTCTTTTCT
TAGAGCACACAAAGAACAGTCAATTCTGGGCCCTCCATTTACATCTGGTA
CCCTTACTTATAAGTTGAACTCTACCTCTTCCCAGTCCTTTCAGTGCTAT
TTCAGTCTCCGTTCTTTTGTAATTCAATGGTTCTTCTTTACGGGTGGCAT
TTCTCTGCCTTCCTCAGAATTTCCCTTGCCTCTCTTCTGGCTGGTCCTGT
AATAGCCTTGGCAATCTTATGAAACATAGAGTAAATATTTATTCATCCTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_j02.b1 MSMg01no537_j02.b1 CHROMAT_FILE:
MSMg01no537_j02.b1 PHD_FILE: MSMg01no537_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:58 2005
         (672 letters)



>mm_chr4_14785250_14786321
          Length = 1072

 Score = 1176 bits (608), Expect = 0.0
 Identities = 653/668 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatgttagttcctttaaggactttcaaaacataatatggacacagcaaaatt 64
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaatactccatgtaagttcctttaaggactttcaaaacataatatggacacagcagaatt 264

                                                                       
Query: 65  tcattagttggaatttaattgtcttttcctaaagtgggacacagaccattgtaaataaag 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcattagttggaatctaattgtcttttcctaaagtgggacacagaccattgtaaataaag 324

                                                                       
Query: 125 ggtaaacagtcgtataactgtacaatggctttcaacaatcccatcttcttatgttccatg 184
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 325 ggtaaacagtcgtataactgtacaatggctttcaacaatcctgtcttcttatgttccatg 384

                                                                       
Query: 185 cccctttgcgatgtgattgctggtcctcccaccaagaaacagtgcctattcctccactgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccctttgcgatgtgattgctggtcctcccaccaagaaacagtgcctattcctccactgg 444

                                                                       
Query: 245 ccttgtaacttcaaagaggaagggtgatcactagttgtccaaccgagagtcaaaggtagg 304
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 ccttgtaacttcgaagaggaagggtgatcactagttgaccaaccgagagtcaaaggtagg 504

                                                                       
Query: 305 attcgaaagccgctgacagccaaagtgtgttgtaaaagtgacagtgttggaaactgcact 364
           |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||
Sbjct: 505 attcgaaagccgctgacagccaaagcatgttgtaaaagtgacagtgttggaaacggcact 564

                                                                       
Query: 365 ctcaccatggcttcctcttggagtagagctttaatactagaaggcacataaggattgtga 424
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcactgtggcttcctcttggagtagagctttaatactagaaggcacataaggattgtga 624

                                                                       
Query: 425 ggagatgtccatccacctcagatgtcctagctgaaaccagctataagcaaactttccagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 625 ggagatgtccatccacctcagatgtcctagctgaaaccagctataagcaaagtttccagc 684

                                                                       
Query: 485 taagcttagctggctaagttgatgcaagtctagtcacctaatcaacctacagacaattat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagcttagctggctaagttgatgcaagtctagtcacctaatcaacctacagacaattat 744

                                                                       
Query: 545 gtgcaaccagtcacattgtgtaaagcaactggctttggatgtgctttgctatgtagcaaa 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 gtgcaaccagtcacattgtgtaaagcaactggctttggatgtgctttgctatatagcaaa 804

                                                                       
Query: 605 taactagggtggcagtccagttacactatacgtcacattgcttgtgtgagcaaaacctct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taactagggtggcagtccagttacactatacgtcacattgcttgtgtgagcaaaacctct 864

                   
Query: 665 cattatag 672
           ||||||||
Sbjct: 865 cattatag 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_j02.g1 MSMg01no537_j02.g1 CHROMAT_FILE:
MSMg01no537_j02.g1 PHD_FILE: MSMg01no537_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:58 2005
         (613 letters)



>mm_chr4_14959284_14960296
          Length = 1013

 Score =  733 bits (379), Expect = 0.0
 Identities = 391/395 (98%)
 Strand = Plus / Minus

                                                                        
Query: 219  acagactttaggcaccacccacagactttggtaatgccttctatgggtgttttgttccct 278
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1012 acagactttaggcaccacccacagactttggtaatgccttttatgggtgttttgttccct 953

                                                                        
Query: 279  attctaaggaggaatgaagtatccacactttggtcttccttcttcttgattttcttgtgt 338
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  attctaaggatgaatgaagtatccacactttggtcttccttcttcttgattttcttgtgt 893

                                                                        
Query: 339  tttgcaaattatatcttgggtattctaagtttctgggctaatatccacttatcagtgaat 398
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  tttgcaaattgtatcttgggtattctaagtttctgggctaatatccacttatcagtgaat 833

                                                                        
Query: 399  gcatatcaaggattcttttcttagagcacacaaagaacagtcaattctgggccctccatt 458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  gcatatcaaggattcttttcttagagcacacaaagaacagtcaattctgggccctccatt 773

                                                                        
Query: 459  tacatctggtacccttacttataagttgaactctacctcttcccagtcctttcagtgcta 518
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 772  tacatctggtacccttacttataagttgaactctacctcttcccagtcctttcagtacta 713

                                                                        
Query: 519  tttcagtctccgttcttttgtaattcaatggttcttctttacgggtggcatttctctgcc 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  tttcagtctccgttcttttgtaattcaatggttcttctttacgggtggcatttctctgcc 653

                                               
Query: 579  ttcctcagaatttcccttgcctctcttctggctgg 613
            |||||||||||||||||||||||||||||||||||
Sbjct: 652  ttcctcagaatttcccttgcctctcttctggctgg 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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