BAC Information

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BAC

Clone NameMSMg01-537N10
Chromosome4 (Build37)
Map Location 116,052,446 - 116,053,095
singlet/doubletsinglet
Overlap geneMast2
Upstream geneCyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
Downstream geneLOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537N10.T7 (MSMg01no537_n10.b1)MSMg01-537N10.TJ (MSMg01no537_n10.g1)
ACCAG604712AG604713
length747759
length of high quality
(start - end)		654 (49 - 702)564 (81 - 644)
definitionCHROMAT_FILE: MSMg01no537_n10.b1 PHD_FILE: MSMg01no537_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:19 2005CHROMAT_FILE: MSMg01no537_n10.g1 PHD_FILE: MSMg01no537_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTTGTGTTGGCCATCAACTGCTAAGGATGAGGCCTGCCCT
TAGATCTATATACCCAGTCAGACTGGAGAAAACAAATTTTTTCTTTGTGA
AAGGTTATCGGTTGGCCTTGGCTTCTTGGTTAGGGTTAGGGACTTGTGTC
CACTTTCCCTGTCAGTATTGGGACCCCATCTTAGCCAGTATAATTAACCA
CTGAGCTATCTCTCCAGCTCCCATATAAATCTTTAAAAACAAAAAAGTTT
AATCTAATGGACTCTAAAGTACAATGTTCTATGTATCATGAGAAATATAA
TCTCAATTCTTTAAAGATCCAGCTACTTTTCCTTTCCCATAGAAAAATCC
AGCTTTGTAAAAATCTTGTAACACAGTAGCATGTAAATAAAGTATACATA
GAAGTATTGATTTAAAAAACATTCTAATGTTTATTTTAACCTATTAGTAA
GGGAGACAGACAGTTGTAACACTTCAAAGAACTTAAAGAAGTACGATTTA
TGTGGATTAAAATACATGTACAAGTGTTTTCAAAACTGGCCTTTTCTATG
GTAAAGGGAAGTACTTAGATAATTACAGAATTCATTTGCATGTATATAGA
AAATACTTTGTATTGCCATCAGTTATGAGTAGCTTATGAGTTATAAAAAT
AGCTTAAATGCAATAAAAGACTAGAGTCAAACAAGGGAATGTTTTCT

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCCTTTTACTTTGTATC
CAGTTTGTACACATTTTGATTTTGACTGTTTCCTGGGCCTGTCTCAACTC
AGTACACCCACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACCCTCCCCCCCTACCCCCCCCCCCCTTTTTTGTTTT
TTTCCAGATAGGATTTCCTTGTGTAGACCTGGCTACCTTGGAACTAACTC
TGTAGACTAGGCTGGCCTCAGACTTAGTTTTTGAACTCAAGAGATCTGCT
TGCCTCTCTCTCTAGAGTGCTGGGTCTAAAGGAATGAGCCACCGTGACTG
GCTTAACTCAGAGCACTTTTAAGAAAAGGTAGAACCCAGCTGGGCAGTGG
TGGCGCATGTCTTTAATCCCAACACTTGGGAGGCAGAGACAGGCGGATTT
CTGAGTTTGAGGCCAGCCTGGTCTACAGGGTGAGTTCCAGGATAGCCAGG
GCTACACAGAGAAATCCTGTTTCAACAAAACAAAGCAAAACAAAAACCAA
ACAAAAACAAACAAACAAAAAAAACAAAACAAGAAAGGCAGAACCCTTTA
GGAGGTAGAGGATTAAAAGTGGAGACCCTTCTAGAGGCCAGTCAATACAC
AGAGCTACTGAGGATAGGTTTTGCTCAAGCTTAAATCANGTTGTCAACTC
ACACACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_n10.b1 MSMg01no537_n10.b1 CHROMAT_FILE:
MSMg01no537_n10.b1 PHD_FILE: MSMg01no537_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:19 2005
         (654 letters)



>mm_chr4_116052170_116053223
          Length = 1054

 Score = 1241 bits (642), Expect = 0.0
 Identities = 648/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttgtgttggccatcaactgctaaggatgaggcctgcccttagatctatata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gaattcattttgtgttggccatcaactgctaaggatgaggcctgcccttagatctatata 867

                                                                       
Query: 65  cccagtcagactggagaaaacaaattttttctttgtgaaaggttatcggttggccttggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 866 cccagtcagactggagaaaacaaattttttctttgtgaaaggttatcagttggccttggc 807

                                                                       
Query: 125 ttcttggttagggttagggacttgtgtccactttccctgtcagtattgggaccccatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttcttggttagggttagggacttgtgtccactttccctgtcagtattgggaccccatctt 747

                                                                       
Query: 185 agccagtataattaaccactgagctatctctccagctcccatataaatctttaaaaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agccagtataattaaccactgagctatctctccagctcccatataaatctttaaaaacaa 687

                                                                       
Query: 245 aaaagtttaatctaatggactctaaagtacaatgttctatgtatcatgagaaatataatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaaagtttaatctaatggactctaaagtacaatgttctatgtatcatgagaaatataatc 627

                                                                       
Query: 305 tcaattctttaaagatccagctacttttcctttcccatagaaaaatccagctttgtaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcaattctttaaagatccagctacttttcctttcccatagaaaaatccagctttgtaaaa 567

                                                                       
Query: 365 atcttgtaacacagtagcatgtaaataaagtatacatagaagtattgatttaaaaaacat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atcttgtaacacagtagcatgtaaataaagtatacatagaagtattgatttaaaaaacat 507

                                                                       
Query: 425 tctaatgtttattttaacctattagtaagggagacagacagttgtaacacttcaaagaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctaatgtttattttaacctattagtaagggagacagacagttgtaacacttcaaagaac 447

                                                                       
Query: 485 ttaaagaagtacgatttatgtggattaaaatacatgtacaagtgttttcaaaactggcct 544
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 446 ttaaagaagtacgatttatgtggattaaaatacatgtacaaatgttttcaaaactggcct 387

                                                                       
Query: 545 tttctatggtaaagggaagtacttagataattacagaattcatttgcatgtatatagaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttctatggtaaagggaagtacttagataattacagaattcatttgcatgtatatagaaa 327

                                                             
Query: 605 atactttgtattgccatcagttatgagtagcttatgagttataaaaatag 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atactttgtattgccatcagttatgagtagcttatgagttataaaaatag 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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