BAC Information

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BAC

Clone NameMSMg01-537O24
Chromosome4 (Build37)
Map Location 144,384,297 - 144,384,803
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242
Downstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537O24.T7 (MSMg01no537_o24.b1)MSMg01-537O24.TJ (MSMg01no537_o24.g1)
ACCAG604788AG604789
length738738
length of high quality
(start - end)		611 (49 - 659)507 (87 - 593)
definitionCHROMAT_FILE: MSMg01no537_o24.b1 PHD_FILE: MSMg01no537_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:27 2005CHROMAT_FILE: MSMg01no537_o24.g1 PHD_FILE: MSMg01no537_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNCCTTTTNGGGGGGAAGGGGCGCATGAAGACTCACTATATTTAGAG
GATCCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTT
ATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTG
GAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCA
TTGCTGTTCTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAG
TTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGAT
CGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTG
TTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAA
GATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTAT
TCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATC
ACAATTGCCCTGTAGTAAAGTTTTAAGTCAGGCATGGTGATTCCACCAGA
GGTTCTTTTATCCTTGAGAAGAAGTTTTGCTATCCTAG

NNNAAGGGGNNNCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAGTTACAGA
AGAGACCAGTAATCTACAAATTATGTTAATAATGTCCACTCAATTTGCAC
TTGGCAACCTTAGAGAAAGTACTCTGCTAACAAAATATTAGGGATTTAAA
TTATCACTCAAATGTTTTCCACAATTTTCTCCCATTCTGTAGTTTGTCTC
TTCAATAAATTAACCATGTTTTAATCATATAGAATATATTTAAAAACTTA
ATAAAGTTACATTTGCCAACTGTTGCCTCATTTGCAGAGTGATTGAAATT
GTTTGGATATGTTATATTTTCACTTTTATTCAATTTTAGGAAGTTTTTTT
ATTTTCTTCCATATCCTCTTCAATATTTTGTAGTGTGTTGTTTAGTCTCT
GTGAATTTGAGTGATTTTTGTTGTTCTTGTGGATTTCTGTCTTTATTCAA
CTCTGGTCAGATAGAATATATGAAGTTACTTTATTTTCTTGTCTTTGTTG
AGAGTTGCTTTGTGTTATACTTCATAGAAAGTTCTGTGGGCTGTGTAGAT
TCTTCATTCTATAGTGTTTGTGTAGAATGTTTTATAGATGTCAGTTGCAT
TCATATGATCTATGATGTCATCTAACTCTCATGTGTCTGCACTTATTTTT
GGTCTAGTTGACATGTCTATTGGTTAGAGCTGAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_o24.g1 MSMg01no537_o24.g1 CHROMAT_FILE:
MSMg01no537_o24.g1 PHD_FILE: MSMg01no537_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:27 2005
         (507 letters)



>mm_chr4_144384247_144385153
          Length = 907

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaagttacagaagagaccagtaatctacaaattatgttaataatgtccactcaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttttaagttacagaagagaccagtaatctacaaattatgttaataatgtccactcaattt 498

                                                                       
Query: 61  gcacttggcaaccttagagaaagtactctgctaacaaaatattagggatttaaattatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcacttggcaaccttagagaaagtactctgctaacaaaatattagggatttaaattatca 438

                                                                       
Query: 121 ctcaaatgttttccacaattttctcccattctgtagtttgtctcttcaataaattaacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctcaaatgttttccacaattttctcccattctgtagtttgtctcttcaataaattaacca 378

                                                                       
Query: 181 tgttttaatcatatagaatatatttaaaaacttaataaagttacatttgccaactgttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgttttaatcatatagaatatatttaaaaacttaataaagttacatttgccaactgttgc 318

                                                                       
Query: 241 ctcatttgcagagtgattgaaattgtttggatatgttatattttcacttttattcaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcatttgcagagtgattgaaattgtttggatatgttatattttcacttttattcaattt 258

                                                                       
Query: 301 taggaagtttttttattttcttccatatcctcttcaatattttgtagtgtgttgtttagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taggaagtttttttattttcttccatatcctcttcaatattttgtagtgtgttgtttagt 198

                                                                       
Query: 361 ctctgtgaatttgagtgatttttgttgttcttgtggatttctgtctttattcaactctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ctctgtgaatttgagtgatttttgttgttcttgtggatttctgtctttattcaactctgg 138

                                                                       
Query: 421 tcagatagaatatatgaagttactttattttcttgtctttgttgagagttgctttgtgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcagatagaatatatgaagttactttattttcttgtctttgttgagagttgctttgtgtt 78

                                      
Query: 481 atacttcatagaaagttctgtgggctg 507
           |||||||||||||||||||||||||||
Sbjct: 77  atacttcatagaaagttctgtgggctg 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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