Query= MSMg01no538_b24.b1 MSMg01no538_b24.b1 CHROMAT_FILE:
MSMg01no538_b24.b1 PHD_FILE: MSMg01no538_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:42 2005
(643 letters)
>mm_chr4_113762018_113763061
Length = 1044
Score = 323 bits (167), Expect = 3e-92
Identities = 218/239 (91%), Gaps = 11/239 (4%)
Strand = Plus / Minus
Query: 4 ggaattctctcattc-acaagattggattttctggaaaccacagggtcttcatgactcta 62
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggaattctctcactcaacaagattggattttctggaaaccacagggtcttcatgactcta 246
Query: 63 cttctccagtaccagga-taacaagatttgggatcttatttactgtttattttattttat 121
| ||| ||||||||||| ||| ||| |||||| |||| ||||| ||||||||||||||||
Sbjct: 245 cctctacagtaccaggattaa-aagctttgggctcttttttaccgtttattttattttat 187
Query: 122 tttattttattttattttattttattttattttattttttaatattgatagtatcaaatg 181
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 186 tttattttattttattttattttatttta--ttatttcttaatattgatagtatcaaatg 129
Query: 182 caagtagccacaactgcacaata------atatgtgtataggcatgactgtaatctttt 234
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 128 caagtagccacaattgcacaataatctttatatgtgtataggcatgactgcaatctttt 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_b24.g1 MSMg01no538_b24.g1 CHROMAT_FILE:
MSMg01no538_b24.g1 PHD_FILE: MSMg01no538_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:42 2005
(647 letters)
>mm_chr4_113717457_113718503
Length = 1047
Score = 814 bits (421), Expect = 0.0
Identities = 590/653 (90%), Gaps = 25/653 (3%)
Strand = Plus / Plus
Query: 1 agtgggcttcaaggattttctaggacattggaacactggtggaggcttacctatgtcaaa 60
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 203 agtgggcttcaaggattttctaggaccttggaacactggtggaggtttacctatgtcaaa 262
Query: 61 aatcaatctttaaagttacttaaaataaaacaacactgaaagagagcatacaccagacta 120
||| ||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||
Sbjct: 263 aataaatctttaaaggtacttataataaaacaatactgaaagagggcatacaccagacta 322
Query: 121 atacagggg-cagggtttgagtatatgggctatgggaatgccaaggttccagggggcata 179
| || |||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct: 323 acac-ggggacagggtttgagtatatgggctatgggaatgccaaggttcaaggagacata 381
Query: 180 gtgtccttgaaactctgtgcctcatgagtgcttccaggcctctcagcctgtcaagcagac 239
|| |||||||| |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 gtttccttgaatctctttgcctcatgagtgcttccaggcctc--agcctgtcaagcaga- 438
Query: 240 ttaac--tggagtggaaatagcagatttgtcacccctgaaccagcataaagccatatact 297
|| | |||||||||||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct: 439 -tatcgatggagtggaaatagcatattggtcacccctgaaccagcataactccatatact 497
Query: 298 ctaca-tgtgtcatagagacacctaacagtgga-gctcaggctcaccttttaatctaccc 355
||| | |||||||||||||||||||||||| || | |||||||||||||||||||||| |
Sbjct: 498 cta-agtgtgtcatagagacacctaacagttgatg-tcaggctcaccttttaatctactc 555
Query: 356 acaaagaatgcagtgcaagtagtcaccatcagattatctctaccaaaaaaataaaataaa 415
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 556 acaaagaatgcagtgcaagtagtcaccatcagattatctctaccaaaata-taaaa---- 610
Query: 416 ataaaataaaataaatctgaagctaccacgactttgctgccataaactgcttacaagaac 475
|||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||
Sbjct: 611 ataaaa----ataaatctgaaactatcacgactttgctgccataaactgcttagaagaac 666
Query: 476 atatcaaaccctaccaacaaggactagataacatacatattaaactcttattatatttct 535
|||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 667 atatcaaatcctacccacaaggactagataacatacatattgaactc--attatatttcc 724
Query: 536 tttaattttcccatgtttttaaatccagtgctagctctttttttttac-ctttataatag 594
|||||||||||| | |||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 725 tttaattttcccttatttttaaatccagtgctagctcaatttttttaatctttaaaatag 784
Query: 595 attctagtgaagtaggaagccccaaaaatctctcttgatacttctacatattt 647
|||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 785 attctattgaagtaggaagccccaaaaacctctcttgatt-ttctacatattt 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
