GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ATGCTTTAAAAGGTACTCACCCCTTTCCTTTGAGGCCTTTTTTAAAACAC
TTGCCAAGTAAAAAGCAAAAAAATGGCAGGGAGTGGTAAAGTTCCATCTG
CTTATAATTTAGAGCTAAGCAAAAGGCCAGTGACCCTAGCAGGTCCCAGT
CCCAAGATACTCCAAGAACACCCCACAATGCAAAGCCAAGACTCACAGAA
TTATATATGTTCCTGTGTCAAGGAAATTAGCTCAATAATTAAGAGACAGT
TTACATCATACAGAGCATATTTCTTGCGTGATTTAAAAATAGCATATATC
TACAATAAAAGCTTACTTCTAAATATGACCTGAAAGCACTAAAGTGATAA
AAAATGTCTACAAAAAATATATACAAAGCAATCTCAAGTATACTAAATCG
CTACACAGCAACTGAGAATTATAAATATAGATACCATAGACTTGTTCTGT
TTATTAAAAGGTGCCAAATCTAGAGAACAAAACTATCCTGGTAGCAAGTT
TAATTATGACAACAAAATTACTGCTGTCTCTGTATGCTGCTTTTATTCTA
TATGTCAATCAGATAAAGAATCAAAAGAAGAAGGGGCGGAAAAGAAGGAA
AATTTTAATTAGAATTTCAAAATATGTCTAAGAAGACAAATGGAATCGAG
GTGTTCATGGCAAAGACAGG

ACTAATGGGAGGAGTGAGGGGCGCCTGTTTTXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGACACTTCAAACTGGGTGCAGTGAC
TTGTGCCTGCAATCTCAGCATTAGGGAGGCAGAGGCCAGAAGATCAGGTG
TTCAGGGTCACCCTTGGCTTCATCAAGTGCAAATCTAGTCAATAATACAT
GAAACTCTATCTCAAACAAAAAAGGGGAAAGAGAAAGAGGAAGAGAGGAG
GAGGGGAGAGTGGGGAAGGGAAAGAGGGAAAAGAGAAGGGAAGGAGGAAT
ATGAGGGAGTGAGAGGTTTTTTTGGCGAGTGTTTAGGTTGTTATTGTGAG
GCTTTTTTGTTTTTTCCTGTTGTGTAGTCATCGGCATGTATATGTTTGAT
TGTTTTTTCTTATATGGTTGCATCTATTATTGTGGAAGGTTTGGCGCATG
CTGCGTGTTTGTTGTTTTCGTTTTGAGGGGAACATTCATGTGTTTTAGGG
ATAATGAGGCGTTGAGAGAACGTGGCCCATGCATGACAGCGATGAGGTAT
CGTCTATGTGACCCGGCGTGTTTACTAGGTGCTTTCTCACGACTGTTTCT
TGTCCTTTTGTTAGTCTTCTTGTTCGTCGCCAGATGATTTCCATTCATGT
TTTTGTGTTTTTCCCTTTTTGTAGCCGCTTTATTTTTTTTTCTGTGTGCT
ATTGCAGATCGTTTTTAGTTTATTTTTCACCTTTTTGCTGGGAGCCGGCA
CANTGCTTACGTATTTCTTTTTGGTCCGCGTGTTTTA

Query= MSMg01no538_c05.b1 MSMg01no538_c05.b1 CHROMAT_FILE:
MSMg01no538_c05.b1 PHD_FILE: MSMg01no538_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:43 2005
         (681 letters)



>mm_chr4_99409997_99411077
          Length = 1081

 Score = 1036 bits (536), Expect = 0.0
 Identities = 609/662 (91%), Gaps = 44/662 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgctttaaaaggtactcacccctttcctttgaggccttttttaaaacacttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gaattctatgctttaaaaggtactcacccctttcctttgaggccttttttaaaacacttg 603

                                                                       
Query: 65  ccaagtaaaaagcaaaaaaatggcagggagtggtaaagttccatctgcttataatttaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ccaagtaaaaagcaaaaaaatggcagggagtggtaaagttccatctgcttataatttaga 543

                                                                       
Query: 125 gctaagcaaaaggccagtgaccctagcaggtcccagtcccaagatactccaagaacaccc 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gctaagcaaaatgccagtgaccctagcaggtcccagtcccaagatactccaagaacaccc 483

                                                                       
Query: 185 cacaatgcaaagccaagactcacagaattatatatgttcctgtgtcaaggaaattagctc 244
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 482 cacaacgcaaagccaagactcacagaattatatatgttcccgtgtcaaggaaattagctc 423

                                                                       
Query: 245 aataattaagagacagtttacatcatacagagcatatttcttgcgtgatttaaaaatagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aataattaagagacagtttacatcatacagagcatatttcttgcgtgatttaaaaatagc 363

                                                                       
Query: 305 atatatctacaataaaagcttacttctaaatatgacctgaaagcactaaagtgataaaaa 364
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 362 atatatctagaataaaagcttacttctaaatatgacctgaaagcactaaagtgataaaga 303

                                                                       
Query: 365 atgtctacaaaaaatatatacaaagcaatctcaagtatactaaatcgctacacagcaact 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgtctacaaagaatatatacaaagcaatctcaagtatactaaatcgctacacagcaact 243

                                                                       
Query: 425 gagaattataaatatagataccatagacttgttctgt----------------------- 461
           |||||||||||||||||||||||||||||||||||||                       
Sbjct: 242 gagaattataaatatagataccatagacttgttctgttaaaccacttcacaaaagtatta 183

                                                                       
Query: 462 ---------------------ttattaaaaggtgccaaatctagagaacaaaactatcct 500
                                |||||||||||||||||||||||||||||| ||||||||
Sbjct: 182 ttaaaagtattattaaaagtattattaaaaggtgccaaatctagagaacaagactatcct 123

                                                                       
Query: 501 ggtagcaagtttaattatgacaacaaaattactgctgtctctgtatgctgcttttattct 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggtagcaagtttaattatgacaacaaaattactgctgtctctgtatgctgcttttattct 63

                                                                       
Query: 561 atatgtcaatcagataaagaatcaaaagaagaaggggcggaaaagaaggaaaattttaat 620
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 62  atatgtcaatcagataaagaatcaaaagaaaaaggggcggaaaagaaggaaaactttaat 3

             
Query: 621 ta 622
           ||
Sbjct: 2   ta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)