BAC Information

Click to search

BAC

Clone NameMSMg01-538E07
Chromosome4 (Build37)
Map Location 106,831,403 - 106,832,086
singlet/doubletsinglet
Overlap gene2210012G02Rik
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2
Downstream geneTmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538E07.T7 (MSMg01no538_e07.b1)MSMg01-538E07.TJ (MSMg01no538_e07.g1)
ACCAG605038AG605039
length735744
length of high quality
(start - end)		645 (38 - 682)674 (65 - 738)
definitionCHROMAT_FILE: MSMg01no538_e07.b1 PHD_FILE: MSMg01no538_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:53 2005CHROMAT_FILE: MSMg01no538_e07.g1 PHD_FILE: MSMg01no538_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
ACTGACGAATACCGAATGGCTGAGAAGCACCTGAAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTA
GCGAGAATGTGGAGAAAGAGGGACACTCCTCCATTGTTGGTGGGATTGCG
AGCTTGTACAACCACTAGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACTGGAAGATCCAGCAATTCCTCTCCTGGGCATATATACC
CAGAAGATGTTCCAACTTGTAATAAGGAAACATGCTCCACTATGTTCATA
GCAGCCTTCTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACT
ACTCAGCAATTAAACAATGAATTCATGAAATTCTTAGGCAAATGGATGAA
TCTGGAAGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAC
ATGATATGCACTCACTGGTAAGCGAATATTAGCCCAGAAACTTAGAATAT
CCAAGATACAATTTGCAAAACACATGAAACTCCAGAAGGAAGACCAAAGT
GTTGATACTTCACCCCTTCTTAGAATGGAGAACAA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAAATGCAGGCTGGGTGTGGTGGCACACACCTTTAA
TTTCAGTATTTGGGAGGCAGAGGCAGGAGGATCTCCGTGAATTTGAGGCC
AGCCTTTGTCTACAAAGTAAGTTGCAGGACACCAGTGCTGTTATACAGAG
AAACCCTGTCTCAAAAAAATCAAAATGATAAACTCTTACCAGTAAATGAA
CAAAGAACACAAATACTTGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAAG
AAAAGAGAAAGGAAAAGGACAAATGGCTGACAAGCCTATTACAAACACTT
AGTCTACTTAGTAAATGAAAATAAGAATCTATTTCTCTGACCTATCTATT
TTTTGGCCTGTTGGATTACTGAGAGTTTAAGAAAGATGTAGGCATGCAAA
TGAAGACAACATTCCTAGGATGTAAGATTCCCACCCACATGGAGACAGGA
AGCGCACAGAGCAGTCTAGATGAAGGCCTTGGGTAGGCTGCTCGAGGCTG
GGCTGCCCTTCCTGAAGAAGCATCGTTGCTGGGGAAAATAGAAGCAGAGC
TGGAAGGCAAGCAGAGCATGGAGAATGCCGCCAACTCCTGGCCCTTCCCT
CTCTTGGACAGGCACATTCTGCACTCAGGTTCTGTAGCAGTGAGGTGTGA
GGCAGCACACACAACAGCACGGCCCTGCTGGCACAGAGACTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_e07.g1 MSMg01no538_e07.g1 CHROMAT_FILE:
MSMg01no538_e07.g1 PHD_FILE: MSMg01no538_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:53 2005
         (674 letters)



>mm_chr4_106831213_106832286
          Length = 1074

 Score = 1249 bits (646), Expect = 0.0
 Identities = 671/684 (98%), Gaps = 10/684 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgcaggctgggtgtggtggcacacacctttaatttcagtatttgggaggcagaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaatgcaggctgggtgtggtggcacacacctttaatttcagtatttgggaggcagaggc 250

                                                                       
Query: 61  aggaggatctccgtgaatttgaggccagcctttgtctacaaagtaagttgcaggacacca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 251 aggaggatctccgtgaatttgaggccagcctttgtctacaaagtaaattgcaggacacca 310

                                                                       
Query: 121 gtgctgttatacagagaaaccctgtctcaaaaaaatcaaaatgataaactcttaccagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtgctgttatacagagaaaccctgtctcaaaaaaatcaaaatgataaactcttaccagta 370

                                                                       
Query: 181 aatgaacaaagaacacaaatacttgagagagagagaga-------a-agagagag--aga 230
           ||||||||||||||||||||||||||||||||||||||       | ||||||||  |||
Sbjct: 371 aatgaacaaagaacacaaatacttgagagagagagagagagagagagagagagagaaaga 430

                                                                       
Query: 231 gagaagaaaagagaaaggaaaaggacaaatggctgacaagcctattacaaacacttagtc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagaagaaaagagaaaggaaaaggacaaatggctgacaagcctattacaaacacttagtc 490

                                                                       
Query: 291 tacttagtaaatgaaaataagaatctatttctctgacctatctattttttggcctgttgg 350
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 491 tacttagtaaatgaaaataagaatttatttctctgacctatctattttttggcctattgg 550

                                                                       
Query: 351 attactgagagtttaagaaagatgtaggcatgcaaatgaagacaacattcctaggatgta 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 attactgagagtttaagaaagatgtaggcatgcaaatgaagacaacattcctaggatgta 610

                                                                       
Query: 411 agattcccacccacatggagacaggaagcgcacagagcagtctagatgaaggccttgggt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agattcccacccacatggagacaggaagcgcacagagcagtctagatgaaggccttgggt 670

                                                                       
Query: 471 aggctgctcgaggctgggctgcccttcctgaagaagcatcgttgctggggaaaatagaag 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aggctgctcgaggctgggctgcccttcctgaagaagcatcgttgctggggaaaatagaag 730

                                                                       
Query: 531 cagagctggaaggcaagcagagcatggagaatgccgccaactcctggcccttccctctct 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cagagctggaaggcaagcagagcatggagaatgccgccaactcctggcccttccctctct 790

                                                                       
Query: 591 tggacaggcacattctgcactcaggttctgtagcagtgaggtgtgaggcagcacacacaa 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tggacaggcacattctgcactcaggttctgtagcagtgaggtgtgaggcagcacacacaa 850

                                   
Query: 651 cagcacggccctgctggcacagag 674
           ||||||||||||||||||||||||
Sbjct: 851 cagcacggccctgctggcacagag 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |