Query= MSMg01no538_f04.b1 MSMg01no538_f04.b1 CHROMAT_FILE:
MSMg01no538_f04.b1 PHD_FILE: MSMg01no538_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:57 2005
(653 letters)
>mm_chr4_102626356_102627408
Length = 1053
Score = 1185 bits (613), Expect = 0.0
Identities = 625/629 (99%)
Strand = Plus / Minus
Query: 5 gaattcaaaatgtacgctctgaggactatattattttgtttccctagtggaaaattatag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaattcaaaatgtaggctctgaggactatattattttgtttccctagtggaaaattatag 570
Query: 65 ggccatatgggtcaagaaaacaatttcagacaattggagtgtgcatgccacgggattgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggccatatgggtcaagaaaacaatttcagacaattggagtgtgcatgccacgggattgca 510
Query: 125 gatttcctgaaatagaaccaagatcataccaacctttccttaagaatcacctattgttgg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 509 gatttcctgaaatagaaccaagatcataccaacctttccttaagaatcacctattgttag 450
Query: 185 atccgagaaaggtgatgtctacactcatttatagataattagataagaacggaagaagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atccgagaaaggtgatgtctacactcatttatagataattagataagaacggaagaagtg 390
Query: 245 attttatagtgctgctcaattcatttgcttacttggatatttatggaatgattaacaagt 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attttatagtgttgctcaattcatttgcttacttggatatttatggaatgattaacaagt 330
Query: 305 cctgaagacaaggttccctagctgatactaacaagtaggtcagagtggaaaggggtttag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctgaagacaaggttccctagctgatactaacaagtaggtcagagtggaaaggggtttag 270
Query: 365 gctgttatcattatagcaagatcatgtttccaagtgatcggaacttagagctttggtgag 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 269 gctgttatcattatagcaagatcatgtttccacgtgatcggaacttagagctttggtgag 210
Query: 425 gtagtaataaaacaaaacaaaacaaaacacctgcatcaaatacagtaattcagcaagtgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gtagtaataaaacaaaacaaaacaaaacacctgcatcaaatacagtaattcagcaagtgc 150
Query: 485 tttaaaaggctggtgtgggaaaagaaaacgggatggttagaaattcagtgatgaagagtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tttaaaaggctggtgtgggaaaagaaaacgggatggttagaaattcagtgatgaagagtt 90
Query: 545 ttataaattatcttggaaaatttgtaagtgaaaacatacactaaaataattttcctttga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ttataaattatcttggaaaatttgtaagtgaaaacatacactaaaataattttcctttga 30
Query: 605 gaatctatatgaaaatctccgcatatgtc 633
|||||||||||||||||||||||||||||
Sbjct: 29 gaatctatatgaaaatctccgcatatgtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_f04.g1 MSMg01no538_f04.g1 CHROMAT_FILE:
MSMg01no538_f04.g1 PHD_FILE: MSMg01no538_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:57 2005
(635 letters)
>mm_chr4_102454554_102455589
Length = 1036
Score = 1151 bits (595), Expect = 0.0
Identities = 625/637 (98%), Gaps = 5/637 (0%)
Strand = Plus / Plus
Query: 1 tctatagctggcattatctaattctctggaatcccataagcaaaaactaactagaatggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tctatagctggcattatctaattctctggaatcccataagcaaaaactaactagaacggt 260
Query: 61 gactctcaatctacaggtcccaacccctttgggggttgaacatccctttcacggggattg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gactctcaatctacaggtcccaacccctttgggggttgaacagccctttcacggggattg 320
Query: 121 catatcagatagtctgtctatcagatagttatgattcgtaacagtagcaagattacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatcagatagtctgtctatcagatagttatgattcgtaacagtagcaagattacattt 380
Query: 181 ctgaagttgttctgaagacagttttatggttggggtcagcacaacatgaagaactgtatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaagttgttctgaagacagttttatggttggggtcagcacaacatgaagaactgtatt 440
Query: 241 aaagggtcacagcatcagagaggttgagtcatcgttctgtccttccatagctgccatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagggtcacagcatcagagaggttgagtcatcgttctgtccttccatagctgccatcct 500
Query: 301 catgtcatctctttaccgagatgtttgttggtataattgtctttacctacaaggccttgc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 catgtcatctctttaccgagatgtttgttggtataattgtcttcacctacaaggccttgc 560
Query: 361 tcaagtacagaaaagagccctgctccttttgtttgccgaatcccaaggccctagcacgac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tcaagtacagaaaagagccctgctccttttgtttgccgaatcccaaggccctagcatgac 620
Query: 421 gtccagctcccggaagtgctttgtaactattcagctgttataacttcttttctccccagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccagctcccggaagtgctttgtaactattcagctgttataacttcttttctccccagc 680
Query: 481 ctagttttgaacaggatgttttgaa---cagcattggctctttagtcagaatggttccag 537
||||||||||||||||| | | || ||||||||||||||||||||||||||||||||
Sbjct: 681 ctagttttgaacaggat--tctaaataccagcattggctctttagtcagaatggttccag 738
Query: 538 aaggaggctttgctttcatccccttcaggaacgctgacatcaatgccatggccattgtca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaggaggctttgctttcatccccttcaggaacgctgacatcaatgccatggccattgtca 798
Query: 598 ctggggaggtttgctagtggctgctttccttaaagac 634
|||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctggggaggtttgctagtggctgctttccttaaagac 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space: 641250
Effective search space used: 641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
