Query= MSMg01no538_m13.b1 MSMg01no538_m13.b1 CHROMAT_FILE:
MSMg01no538_m13.b1 PHD_FILE: MSMg01no538_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:31 2005
(646 letters)
>mm_chr4_108624428_108625473
Length = 1046
Score = 1120 bits (579), Expect = 0.0
Identities = 627/643 (97%), Gaps = 1/643 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcaggaggagcaattagcaaaaactggagttgtctctgtataaaaacaagcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaggaggagcaattagcaaaaactggagttgtctctgtataaaaacaagcag 264
Query: 65 agaaaagaacattagccttcgtgtctttctgcattagatgctagctagacagatgtttgc 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 agaaaagaacattagccttcgtgtctttctgcattagatgctagctaaacagatgtttgc 324
Query: 125 tgctttttcaaattctgtgctatctgaaggctctgcaccttgcctgggcagcacaggaga 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctttttcaaattctgtgctctctgaaggctctgcaccttgcctgggcagcacaggaga 384
Query: 185 actggccctggatatgggggtgttgaaggtgagctgtgcccaaggatgcgtgcacaggaa 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 actggccctggatatgggggtgttgaaggtgagctgtgcccaaggatgtgtgcacaggaa 444
Query: 245 gctggtcctgcctcttggtagtgcagataggggagagacaccttcttcctttccctcttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctggtcctgcctcttggtagtgcagataggggagagacaccttcttcctttccctcttc 504
Query: 305 ccttacctaatctaaggcaggtgtaagagccggtcccagaattaagagagtgggaaaact 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctcacctaatctaaggcaggtgtaagagccggtcccagaattaagagagtgggaaaact 564
Query: 365 gatcccgtccctcactggctgcagcacttgggagagcaggcacctcatctggacagcaca 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 gatcccgtccctcactggctgcagcccttgggagagcaggcacctcatctggacagcaca 624
Query: 425 gtagagctggtcctggtgtgggggttgtgggtgagccagccccaagggcatgagagctgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 gtagagctggtcctggtgtgggggttgtgggtgagccagccccaagggcatgagagcagg 684
Query: 485 tggactgaccatctctgttacctgtcaggcccagattcagg-ctctattggttcgctcca 543
||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct: 685 tggactgaccatctctgttacctgtcaggcccagatttggggctctattggttcactcca 744
Query: 544 atatctactccaatgatgaactgctgaagtgcataaatggacctcttctaccatgacata 603
|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 745 atatctactccagtgatgaactgctggagtgcataaatggacctgttctaccatgacatg 804
Query: 604 gggtaacaacaggatatttgagagggatcccagtgagattcca 646
||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 805 gggcaacaacaggatatttgagagggatccctgtgagattcca 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_m13.g1 MSMg01no538_m13.g1 CHROMAT_FILE:
MSMg01no538_m13.g1 PHD_FILE: MSMg01no538_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:31 2005
(599 letters)
>mm_chr4_108696909_108697907
Length = 999
Score = 1108 bits (573), Expect = 0.0
Identities = 588/599 (98%), Gaps = 10/599 (1%)
Strand = Plus / Minus
Query: 1 aaggctctccttctgcatcagctttcccagtacaaggattacaggaatataccgccacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaggctctccttctgcatcagctttcccagtacaaggattacaggaatataccgccacag 572
Query: 61 ccagcttaaaatagctaatgcttaagaagtcctcctacaatcttcattaagcaatcaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ccagcttaaaatagctaatgcttaagaagtcctcctacaatcttcattaagcaatcaata 512
Query: 121 aatcccattaaaagtctcctatttgatttttagcgtgcaaataaatccccaaaattgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aatcccattaaaagtctcctatttgatttttagcgtgcaaataaatccccaaaattgaga 452
Query: 181 gaaatcatcagaaagcaaaatgaagtacacttcctgctaggactttaatttcttaattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaaatcatcagaaagcaaaatgaagtacacttcctgctaggactttaatttcttaattca 392
Query: 241 caaacatatcacagttaatttataggaaaattcaagccacaagaatatgtaaaattagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 caaacatatcacagttaatttataggaaaattcaagccacaagaatatgtaaaattagct 332
Query: 301 ggcagtaacaaaggataaactgtaacaatgtacacttgaaaggaagccccaacaaagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggcagtaacaaaggataaactgtaacaatgtacacttgaaaggaagccccaacaaagtgt 272
Query: 361 ctcttcacacacacacacacacacacacacacacacacacacacacacacacacacacag 420
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctctt----------cacacacacacacacacacacacacacacacacacacacacacag 222
Query: 421 agtaactgaaattgtgaagctctaaggtctaacaccagctttaggaacccagtatcctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agtaactgaaattgtgaagctctaaggtctaacaccagctttaggaacccagtatcctta 162
Query: 481 tggtttttggcagcttgatcctgaatgagatattcaccaagctcaggattaaatatgatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tggtttttggcagcttgatcctgaatgagatattcaccaagctcaggattaaatatgatg 102
Query: 541 ctgtatttcaatgctgctctttgaaatatacagataaaatgacttagttctgaaaagaa 599
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 101 ctgtatttcaatgctgctctttgaaatatacagataaaattacttagttctgaaaagaa 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
