BAC Information

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BAC

Clone NameMSMg01-538P14
Chromosome4 (Build37)
Map Location 98,722,000 - 98,907,724
singlet/doubletdoublet
Overlap geneDock7, LOC665193, Atg4c
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Angptl3
Downstream geneLOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538P14.T7 (MSMg01no538_p14.b1)MSMg01-538P14.TJ (MSMg01no538_p14.g1)
ACCAG605576AG605577
length742736
length of high quality
(start - end)		690 (50 - 739)421 (66 - 486)
definitionCHROMAT_FILE: MSMg01no538_p14.b1 PHD_FILE: MSMg01no538_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:45 2005CHROMAT_FILE: MSMg01no538_p14.g1 PHD_FILE: MSMg01no538_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(98,722,000 - 98,722,689)(98,907,406 - 98,907,724)
sequence
CGGCCGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCCCAAAAT
AGGATATCTTACCTGTAAGTTGTGTTTGGAACATAGACATCCCTGGCAGG
AAATTCTAAAATTTCTCTGGTGGGCCTGACTCGGCTGTCGGGGTACAGCT
TCACCTGAAGCAGCTCTGGGGTTAGGCAGTAATGGGGATTTTCAGGTGCA
GGAGAAATGTCTATCTTCAGCTGAGCTGCAGAAAATACATTATAAAGTCA
ATGTGAATATAAATGTTCTGTGATGGCTACACTTGGGTCTGAAGTGCTTC
TCAAAGGCTTTTCCAACAAGATGTGGTACTGCTAGGACATGGTAGTTTTA
GGAGGTAGGACCTAGTGGAAGAAATTATGCACTATAAGTATGCCCTGGAA
GAGCATCCCCTGGTCCTTCCTACTTCCATCTACTTCTGGGCACCACAAAC
TAAGCAGCTTTGCTCTGCCCTAGGCAGCTTCACAAAAGTGTTCTGCTCCA
CAATGGGCCCCAAAGCAAAGGCATTCAACTGACGGTTGGAAGCTGTGAAA
AGATGGGCCAAACTAGATCTTTCCTCCATTTAAGTGGATTAGCCTCAAGT
AATTTATTCTCCTGTGAGGTAGTCTGTCACAGCCACAGAATTTGGTTAAC
ACAGAGAAAATGTTCTTAGAGGAATTTCAATATTATTTTGTAAAAAAATA
TGGGATAAACAGTATAGATAAATATTATTAAGAACTTAGACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGTCCAACACAACTCAGATTCTGGACAGCGAAG
CAGAGAAACAGACATAAGGTGGGAAATGCTACCAGAGATAGAGGAAGCAA
ATGTAATTATATAATTGTAAATGATTTAGTTTGGGCCAGGCGAGGCGGTG
CAGACCTGTAATCCCAACACTTGTGATGCAGAAGCGGCAGAATCAGGGAC
TTGGGCCTTCAAGGTGGCTCAGTGGGTGAGGGGGCCTGCGGCCAAGTCTG
ACGGGGAGTTAGGTTGTGGAAATCCATATGGGAGAAGGGACAAGCTGACC
CCTACAAGTTATCTTCTGGCCTACACATGGACACACACACACAATAAACT
CACATGAATAATAAATACAATCATTTGAGAGACGGGGGAAGGGAAGGGAG
GAGGAAGAGAGGGGGAGAGAAAAGGGAGAGGGAGANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNN
NNNNNNNNGNNNNNGNGGNNNGNNNNNGNGNGGGGGGGGGGGGNGNGGGG
GNGNGGNGGGGGGGGGGGNGGGGNNGGNGNGGGGGGGGGGGGNNGGGGGG
GGGGNGNNGGGGNGGGGGGGGGGGGNGGGGGGGNGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_p14.b1 MSMg01no538_p14.b1 CHROMAT_FILE:
MSMg01no538_p14.b1 PHD_FILE: MSMg01no538_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:45 2005
         (690 letters)



>mm_chr4_98721800_98722889
          Length = 1090

 Score = 1334 bits (690), Expect = 0.0
 Identities = 690/690 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggatatcttacctgtaagttgtgtttggaacatagacatccctggcaggaaattctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggatatcttacctgtaagttgtgtttggaacatagacatccctggcaggaaattctaa 260

                                                                       
Query: 61  aatttctctggtgggcctgactcggctgtcggggtacagcttcacctgaagcagctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttctctggtgggcctgactcggctgtcggggtacagcttcacctgaagcagctctgg 320

                                                                       
Query: 121 ggttaggcagtaatggggattttcaggtgcaggagaaatgtctatcttcagctgagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttaggcagtaatggggattttcaggtgcaggagaaatgtctatcttcagctgagctgc 380

                                                                       
Query: 181 agaaaatacattataaagtcaatgtgaatataaatgttctgtgatggctacacttgggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaatacattataaagtcaatgtgaatataaatgttctgtgatggctacacttgggtc 440

                                                                       
Query: 241 tgaagtgcttctcaaaggcttttccaacaagatgtggtactgctaggacatggtagtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagtgcttctcaaaggcttttccaacaagatgtggtactgctaggacatggtagtttt 500

                                                                       
Query: 301 aggaggtaggacctagtggaagaaattatgcactataagtatgccctggaagagcatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaggtaggacctagtggaagaaattatgcactataagtatgccctggaagagcatccc 560

                                                                       
Query: 361 ctggtccttcctacttccatctacttctgggcaccacaaactaagcagctttgctctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggtccttcctacttccatctacttctgggcaccacaaactaagcagctttgctctgcc 620

                                                                       
Query: 421 ctaggcagcttcacaaaagtgttctgctccacaatgggccccaaagcaaaggcattcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaggcagcttcacaaaagtgttctgctccacaatgggccccaaagcaaaggcattcaac 680

                                                                       
Query: 481 tgacggttggaagctgtgaaaagatgggccaaactagatctttcctccatttaagtggat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacggttggaagctgtgaaaagatgggccaaactagatctttcctccatttaagtggat 740

                                                                       
Query: 541 tagcctcaagtaatttattctcctgtgaggtagtctgtcacagccacagaatttggttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagcctcaagtaatttattctcctgtgaggtagtctgtcacagccacagaatttggttaa 800

                                                                       
Query: 601 cacagagaaaatgttcttagaggaatttcaatattattttgtaaaaaaatatgggataaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cacagagaaaatgttcttagaggaatttcaatattattttgtaaaaaaatatgggataaa 860

                                         
Query: 661 cagtatagataaatattattaagaacttag 690
           ||||||||||||||||||||||||||||||
Sbjct: 861 cagtatagataaatattattaagaacttag 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_p14.g1 MSMg01no538_p14.g1 CHROMAT_FILE:
MSMg01no538_p14.g1 PHD_FILE: MSMg01no538_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:45 2005
         (421 letters)



>mm_chr4_98907406_98908226
          Length = 821

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagtccaacacaactcagattctggacagcgaagcagagaaacagacataaggtgggaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agagtccgacacaactcagattctggacagcgaagcagagaaacagacataaggtgggaa 260

                                                                       
Query: 61  atgctaccagagatagaggaagcaaatgtaattatataattgtaaatgatttagtttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgctaccagagatagaggaagcaaatgtaattatataattgtaaatgatttagtttggg 200

                                                                       
Query: 121 ccaggcgaggcggtgcagacctgtaatcccaacacttgtgatgcagaagcggcagaatca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccaggcgaggcggcgcagacctgtaatcccaacacttgtgatgcagaagcggcagaatca 140

                                                                       
Query: 181 gggacttgggccttcaaggtggctcagtgggtgagggggcctgcggccaagtctgacggg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 139 gggacttgggccttcaaggtggctcagtaggtgagggggcctgcggccaagtctgacggg 80

                                                                       
Query: 241 gagttaggttgtggaaatccatatgggagaagggacaagctgacccctacaagttatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gagttaggttgtggaaatccatatgggagaagggacaagctgacccctacaagttatctt 20

                              
Query: 301 ctggcctacacatggacac 319
           |||||||||||||||||||
Sbjct: 19  ctggcctacacatggacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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