Query= MSMg01no539_k03.b1 MSMg01no539_k03.b1 CHROMAT_FILE:
MSMg01no539_k03.b1 PHD_FILE: MSMg01no539_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:39 2005
(542 letters)
>mm_chr4_62210063_62211004
Length = 942
Score = 687 bits (355), Expect = 0.0
Identities = 375/389 (96%), Gaps = 13/389 (3%)
Strand = Plus / Minus
Query: 1 atgtcaacagccaaatacaaaagaagaagtgagacttcaagaaagtattcttgggagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgtcaacagccaaatacaaaagaagaagtgagacttcaagaaagtattcttgggagaca 329
Query: 61 cgggggctaatatgatcaaaacacattacgtgtattatagagttctcaaagaattacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cgggggctaatatgatcaaaacacattacgtgtattatagagttctcaaagaattacatt 269
Query: 121 tttttaaaaaagtatgcttatccttggccttagagacatctccttccattagaaacaaca 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttttaaaaaaagtatgcttatccttggccttagagacatctccttccattagaaacaaca 209
Query: 181 ttagctag------------aaacaaacaaacaaacaaacagtaggtttctttctaaact 228
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttagctagaaacaaacaaacaaacaaacaaacaaacaaacagtaggtttctttctaaact 149
Query: 229 aagtgatccaacccaaccaagggccttttttttttcccccaagacagggttgccctggct 288
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 148 aagtgatccaacccaaccaagggcc-tttttttttcccccaagacagggttgccctggct 90
Query: 289 gtcctagaactcactttgtagaccaggctggccttgaactcagaaatctgcctgcctctg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gtcctagaactcactttgtagaccaggctggccttgaactcagaaatctgcctgcctctg 30
Query: 349 cctcccaagtgctgggattaaaggtgtgt 377
|||||||||||||||||||||||||||||
Sbjct: 29 cctcccaagtgctgggattaaaggtgtgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_k03.g1 MSMg01no539_k03.g1 CHROMAT_FILE:
MSMg01no539_k03.g1 PHD_FILE: MSMg01no539_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:39 2005
(558 letters)
>mm_chr4_62049234_62050191
Length = 958
Score = 1071 bits (554), Expect = 0.0
Identities = 557/558 (99%)
Strand = Plus / Plus
Query: 1 aaggctatccttggctacccagtgaatttgagaccagcttgggctcatgagaccctgtct 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctatccttggctacacagtgaatttgagaccagcttgggctcatgagaccctgtct 260
Query: 61 caaggaaaaatcaaaagttctttacagatgtgtgcgtgcgggcgtcagtttccaggatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggaaaaatcaaaagttctttacagatgtgtgcgtgcgggcgtcagtttccaggatag 320
Query: 121 ccgtgctgcagtccagttaggctgttctcctgagctgcaggtgcccaggtctgactctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgtgctgcagtccagttaggctgttctcctgagctgcaggtgcccaggtctgactctcc 380
Query: 181 ttctctgcttatccccaggcagcagatgctgagcttcccccacctcctgcagacagtgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctctgcttatccccaggcagcagatgctgagcttcccccacctcctgcagacagtgct 440
Query: 241 gcacatcatccaggtagtcatcagctacttcctcatgctcatcttcatgacctacaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacatcatccaggtagtcatcagctacttcctcatgctcatcttcatgacctacaatgg 500
Query: 301 gtacctatgcattgcagtagcagcaggggctgggacgggatactttctcttcagctggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacctatgcattgcagtagcagcaggggctgggacgggatactttctcttcagctggaa 560
Query: 361 gaaggcagtggtggtggacatcacagagcactgccattgatatcagactccacatatggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggcagtggtggtggacatcacagagcactgccattgatatcagactccacatatggc 620
Query: 421 cttattaattgctgtaggaagcatcttgggactggaagatatgattccctttccaatcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttattaattgctgtaggaagcatcttgggactggaagatatgattccctttccaatcat 680
Query: 481 cccttctctctcctgtctatacatacacacctactgaatagaagcctagctgacagtctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccttctctctcctgtctatacatacacacctactgaatagaagcctagctgacagtctc 740
Query: 541 tgaatagtggtttttcta 558
||||||||||||||||||
Sbjct: 741 tgaatagtggtttttcta 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
