Query= MSMg01no539_m18.b1 MSMg01no539_m18.b1 CHROMAT_FILE:
MSMg01no539_m18.b1 PHD_FILE: MSMg01no539_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:52 2005
(641 letters)
>mm_chr4_95309712_95310751
Length = 1040
Score = 1208 bits (625), Expect = 0.0
Identities = 637/641 (99%), Gaps = 1/641 (0%)
Strand = Plus / Plus
Query: 1 agaatggggtgcacattctgtaccctttgaaattgactatagtgcaacagtctctgcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatggggtgcacattctgtaccctttgaaattgactatagtgcaacagtctctgcttt 260
Query: 61 gtcaagtgggaggacccttccctactcacagtggcatcgtgagggtttatcagatatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaagtgggaggacccttccctactcacagtggcatcgtgagggtttatcagatatgtg 320
Query: 121 agcgatacatgtgtggtgctggtatgttggagggaaattagaagtgttaggtatagccac 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcgatacatatgtggtgctggtatgttggagggaaattagaagtgttaggtatagccac 380
Query: 181 tagcatcattgtcagagaatattttaagacatggattatagattttccatgaactaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcatcattgtcagagaatattttaagacatggattatagattttccatgaactaagga 440
Query: 241 atctggaatgctccagaatggctcttagtttaaaaaaaaaatctggggggtacattatct 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 atctggaatgctccagaatggctcttagtttaaaaaaaaa-tctggggggtacattatct 499
Query: 301 gggaaaacaaaggttccagtctcagttctttatgtttcaaatttgcttgttttcagaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggaaaacaaaggttccagtctcagttctttatgtttcaaatttgcttgttttcagaaag 559
Query: 361 gtgatctaataatatcagaatattcactcaacgttttctctgttaaagggttaattgtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgatctaataatatcagaatattcactcaacgttttctctgttaaagggttaattgtta 619
Query: 421 aaagtctagacctaatgactgaaagtattgatgcttctgtcagagggatatgatatctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaagtctagacctaatgactgaaagtattgatgcttctgtcagagggatatgatatctga 679
Query: 481 ccttctatttgtaaggatcaattattgcattgtatgatatttgagtctgcacaaactaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttctatttgtaaggatcaattattgcattgtatgatatttgagtctgcacaaactaac 739
Query: 541 cttaattcctctgctattccattgcattatatacataccatggttgctgatatatgcggt 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 740 cttaattcctctgctattccattgcattgtatacataccatggttgctgatatatgcggt 799
Query: 601 gggatagtatgatttactaaactaaaagccaagcaacatca 641
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 800 gggatagtatgatttactaaactaaaagccaagcaatatca 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_m18.g1 MSMg01no539_m18.g1 CHROMAT_FILE:
MSMg01no539_m18.g1 PHD_FILE: MSMg01no539_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:53 2005
(685 letters)
>mm_chr4_95499638_95500722
Length = 1085
Score = 1263 bits (653), Expect = 0.0
Identities = 677/685 (98%)
Strand = Plus / Minus
Query: 1 agtctaattaggaccacacagtgagactctgtctcaaaaacaaaaacaaaacaatcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 agtctaattaggaccacacagtgagactctgtctcaaaaacaaaaacaaaacaatcctcc 877
Query: 61 actcccagaaccccaccaattaaaatactctggtcaacttttccttgttaccttggcact 120
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 actctcagaaccccaccaaataaaatactctggtcaacttttccttgttaccttggcact 817
Query: 121 agagagagaatgaactctgtgcatatctgccttcctggaatggcccccactaatccctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 816 agagagagaatgaactctgtgcatatctgccttcctggaatggcccccactaacccctcc 757
Query: 181 agtatctactcttgctttccccataaaacatgccatgctcccacggttctgaatctttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agtatctactcttgctttccccataaaacatgccatgctcccacggttctgaatctttca 697
Query: 241 tccatattagctgttggcttcttcttggctgataactgagccaccaggtaagaattatgt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 696 tccatattagctgttggcttcttcttggctgataattgagccaccaggtaagaattatgt 637
Query: 301 ctttgataccaacacacacgaagattgaaaaattatggatcagagcagaaaggaattctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctttgataccaacacacacgaagattgaaaaattatggatcagagcagaaaggaattctg 577
Query: 361 ggacctctctttccaaaccaataatgtgaaaaagtaggcacgatgctactgtctgagcta 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaacctctctttccaaaccaataatgtgaaaaagtaggcacgatgctactgtctgagcta 517
Query: 421 gtggcaactcaaagccccctggcccccaataccattctataactgagggctttttcacct 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtggcaactcaaagccccctgacccccaataccattctataactgagggctttttcacct 457
Query: 481 tgcctctttgttcctcgaaataatgtctctgagacttcttatatataaacaaatgcctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgcctctttgttcctcgaaataatgtctctgagacttcttatatataaacaaatgcctat 397
Query: 541 gccaaaagctttggctcctttctgctagctcataactcaattaacccgtttaaactagtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gccaaaagctttggctcctttctgctagctcataactcaattaacccgtttaaactagtc 337
Query: 601 taagtcagtcaagtggttagctaccactccttggggtttattattctgtctcagcctttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 336 taagtcagtcaagtggttagctaccactccttggggtttattattctgtctcagcgtttg 277
Query: 661 ggcaaatctctctcacctgactatt 685
|||||||||||| ||||||||||||
Sbjct: 276 ggcaaatctctcccacctgactatt 252
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
