GGGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGAAATTCGTAGGCAAATGGATGGAACTAGAAAATATCA
TCCTGAGTGAGGTAGCCCACACACAAAATACCTCACATGGTATGTATTCA
CTGGATTTTAGCCCAAAAGCTCAGAATACCCATGATACATCCCACAAACC
ATATGCAGCTTAAGAAGAAGAAAGACCAAAGTGTAGATGCATCAATCTTA
CATAAAACAGGGAACAAAATAATCACAGGAGTGAGAGAGAGGGAGTGACT
TGGGAGGGAGAGAACCAGGGAAAAAAAGGGGTGTAAGCACAGGTATTGGA
AGGGACAGGAGAAAAGTACAGAGGATTAGGAAACTAAACAGAAACAAGTA
GGTATGGGAATTAGGAAACATGGTGTAGCCACTAGAAAGTCCCAAACTCC
AGGGAAGTGAAAGGCTCCCAAGACCCAACCTGAATGACTTTAGATGAAAT
ACCAAACAAAGGGGAGATACAATCTTCAGAGACCACCTCCAGTAGATAGG
CACAGCCCCCATTTTTTTTAAACTTTTTTTTTCATTTTTATTAGGTATTT
AGCTCATTTGCATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCC
CCCACTTCCCTACCCACCCACTCCCTCTTTTTGGCCCTGGCGTTCCCCTG
TACTGGGGCATATAAAGTTTGCCTG

ATAACCTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAATGATATGCATACACTT
ACTGGGGAGGTAAGGAGCTATTTCATTGATCTTTCTTAAACTGACTCCTA
TATTATAGATTCCATTTGTTTTTACTATTTTAAATAATAAACATACCCTG
TCATTATAGAATACCTTATTTATTTGAGAAAATGTTTAGTAATAGAGGTT
TTTACATCTTTACATAAAAATTTCTATCTTGGTAATATATTTAAATGCAA
TATTATTTCACTAGAAAATATCTATTTAAGGTTTGTAGTTCATCTGTTCG
CTTAACAGCCACTAACAGTTATACTTTATCATAATATTTGATCTGTAAAG
CATTCAAAGCTTTACATGTCATGCCATAAGTAAAATGATTCAAATAATTA
GCAAACTGGAAATGGACAACAGTGGAGCAAAGATGAATGACAGCTAAATC
AAGTAGGGATATTGAGACACATTTCATTATAAATAGAATTTAGGGAAATG
GTTAGTGATAATACAACTGTTATAGCTGTTAGAAAGATTGTGAGGGAAAA
ACCATATTGTTCCAAAATTAACAGTTCTTCTTGATGGCTTCAACAATGAA
ATCATAATGAGAATTTGATACAGGAAGCTGAAGAGCTCAGCAGAAGAGAG
ACCCAAACAGTGCTTTTN

Query= MSMg01no540_a04.g1 MSMg01no540_a04.g1 CHROMAT_FILE:
MSMg01no540_a04.g1 PHD_FILE: MSMg01no540_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:09 2005
         (604 letters)



>mm_chr4_77736417_77737418
          Length = 1002

 Score = 1149 bits (594), Expect = 0.0
 Identities = 601/604 (99%), Gaps = 2/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatgatatgcatacacttactggggaggtaaggagctatttcattgatctttcttaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaatgatatgcatacacttactgcggaggtaaggagctatttcattgatctttcttaa 260

                                                                       
Query: 61  actgactcctatattatagattccatttgtttttactattttaaataataaacataccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgactcctatattatagattccatttgtttttactattttaaataataaacataccct 320

                                                                       
Query: 121 gtcattatagaataccttatttatttgagaaaatgtttagtaatagaggtttttacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcattatagaataccttatttatttgagaaaatgtttagtaatagaggtttttacatct 380

                                                                       
Query: 181 ttacataaaaatttctatcttggtaatatatttaaatgcaatattatttcactagaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacataaaaatttctatcttggtaatatatttaaatgcaatattatttcactagaaaat 440

                                                                       
Query: 241 atctatttaaggtttgtagttcatctgttcgcttaacagccactaacagttatactttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctatttaaggtttgtagttcatctgttcgcttaacagccactaacagttatactttat 500

                                                                       
Query: 301 cataatatttgatctgtaaagcattcaaagctttacatgtcatgccataagtaaaatgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataatatttgatctgtaaagcattcaaagctttacatgtcatgccataagtaaaatgat 560

                                                                       
Query: 361 tcaaataattagcaaactggaaatggacaacagtggagcaaagatgaatgacagctaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaataattagcaaactggaaatggacaacagtggagcaaagatgaatgacagctaaat 620

                                                                       
Query: 421 caagtagggatattgagacacatttcattataaatagaatttagggaaatggttagtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagtagggatattgagacacatttcattataaatagaatttagggaaatggttagtgat 680

                                                                       
Query: 481 aatacaactgttatagctgttagaaagattgtgagggaaaaaccatattgttccaaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatacaactgttatagctgttagaaagattgtgagggaaaaaccatattgttccaaaatt 740

                                                                       
Query: 541 aacagttcttcttgatggcttcaacaatgaaatcataatgagaatttgatacaggaagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 741 aacagttcttcttgatggcttcaacaatgaaatcataatgagaatt--atacaggaagct 798

               
Query: 601 gaag 604
           ||||
Sbjct: 799 gaag 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1002
Length adjustment: 10
Effective length of query: 594
Effective length of database: 992
Effective search space:   589248
Effective search space used:   589248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)