Query= MSMg01no540_e06.b1 MSMg01no540_e06.b1 CHROMAT_FILE:
MSMg01no540_e06.b1 PHD_FILE: MSMg01no540_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:29 2005
(185 letters)
>mm_chr4_116392786_116393370
Length = 585
Score = 348 bits (180), Expect = e-100
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 5 gaattcaatctctccctttggcatttcgtttaagttatacttactgctctttctcaagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatctctccctttggcatttcgtttaagttatacttactgctctttctcaagtt 264
Query: 65 gttaggaattatgtgctaattttagcttgtcaatatactgcgttcctgcaggacactgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttaggaattatgtgctaattttagcttgtcaatatactgcgttcctgcaggacactgca 324
Query: 125 ttcgatccagcagaacaccttattcaaaagccgcgccagtttagtgcttgtttaattggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcgatccagcagaacaccttattcaaaagccgcgccagtttagtgcttgtttaattggc 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space: 102129
Effective search space used: 102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no540_e06.g1 MSMg01no540_e06.g1 CHROMAT_FILE:
MSMg01no540_e06.g1 PHD_FILE: MSMg01no540_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:29 2005
(576 letters)
>mm_chr4_116548449_116549424
Length = 976
Score = 1036 bits (536), Expect = 0.0
Identities = 570/590 (96%), Gaps = 14/590 (2%)
Strand = Plus / Minus
Query: 1 tctgatcccttacctcgggtttaaattaggattttcatgtttttcttgtctgtcttctat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 762 tctgatcccttacctcgggtttaaattaggattttcatgtttttcttgtccgtcttctat 703
Query: 61 tcattcccctgaatttacctaaaatttaatgcgtcttttgttatttgatgtctaactgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcattcccctgaatttacctaaaatttaatgcgtcttttgttatttgatgtctaactgcc 643
Query: 121 taactccataacaatgaaggtcatgtccattttcttcactgtggtgtcccctcacccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taactccataacaatgaaggtcatgtccattttcttcactgtggtgtcccctcacccagg 583
Query: 181 tacattagtgggtactcaagagtgacaacttcaacagtaacttcttcataaacacggagt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tacattagtgggtactcacgagtgacaacttcaacagtaacttcttcataaacacggagt 523
Query: 241 tgtgacgtaatcactacaacttttaaaaagttccaggaactgtattagaaaacatcctat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtgacataatcactacaacttttaaaaagttccaggaactgtattagaaaacatcctat 463
Query: 301 agctgagttcagctagagagagtagtacaaagaacgaataagagaaggtagactgcagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agctgagttcagctagagagagtagtacaaagaacgaataagagaaggtagactgcagcc 403
Query: 361 aaattagtttggttttgcagtaatctctgaagaaaagagttccggctataacctagatgt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 402 aaattagtttggttttgcagtaatctctgaagaaaagagctccggctataacctagatgt 343
Query: 421 gaatcgctcttaatggtcgtgtggtgctaatcacgactcatgatttgtaaaaggaagctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaatcgctcttaatggtcgtgtggtgctaatcacgactcatgatttgtaaaaggaagctg 283
Query: 481 acaacaatatctgtgcatatagcatgtaagaattaaaaatgaggtcaattgcttctttca 540
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 282 acaacaatatctgtgcatatagcatgtaagaattaaatatgtggtcaattgcttctttca 223
Query: 541 taaacattttca--------------gaaataatatgatattatttctgc 576
|||||||||||| ||||||||||||||||||||||||
Sbjct: 222 taaacattttcaaaaataatatttcagaaataatatgatattatttctgc 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
