BAC Information

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BAC

Clone NameMSMg01-540J03
Chromosome4 (Build37)
Map Location 20,460,985 - 20,461,500
singlet/doubletsinglet
Overlap geneE130310K16Rik
Upstream geneCpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540J03.T7 (MSMg01no540_j03.b1)MSMg01-540J03.TJ (MSMg01no540_j03.g1)
ACCAG606790AG606791
length721727
length of high quality
(start - end)
673 (49 - 721)583 (79 - 661)
definitionCHROMAT_FILE: MSMg01no540_j03.b1 PHD_FILE: MSMg01no540_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:53 2005CHROMAT_FILE: MSMg01no540_j03.g1 PHD_FILE: MSMg01no540_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGTTTAGCTCTGAACCCCAATTTTAATTGGGTTATTTGAA
TTTCTGGAGTCTAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCC
CTTATCAGATTTAGGATTGGGGGAGAAGTTCCAACTGGTAATAAGAACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGACAGAAGCTGGA
AAGAACCCAGTTGTCCCTCGACAGAAGAATGGATGCAGAAAATGTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGGATTTATGAA
ATTCTTGGAAAAAGGGATTTATCTGGAGGATAACATACTTAGTGAGGTAA
CCCAATCACAAAAGAAGTCATTAGATATGCACTCACTGATAAGTGGATAT
TAGCTCAGAAATATAGAACACCCAAGATACAATTTGCAAAACACAAGGAA
ATCAAGAAGTGGGAAGACCAATAGATGTATACTTCATTCCTCCTTAGAAT
AGGGAACAAAATAACCATGAAAGGATTTAAAGAGACAAAGTTTGGAGCTA
AGAGGAAAGGATGAACTAGCCAGAGAATACCCCACCCAGGGATCCATCCC
ACAATCAGCTACCAAACACAGACACTATTTCATATGCCAGAAAGATTTTG
CTGAAGGGACTCTGTTATAGC
NNNNGGCATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCTAGATCTGACCTGTGAGT
AAATAGCAGGATGAAGCTATTTGCTTATGAAGGAGCTCACAACTGTTTTT
ATGACCACACAGGTGTATACAGATGACACTATGAGGGAAGTAGGACTAGC
TACTTTGTTATTATAACTATTTTTGCAAGCCTATAAAAAGTCATGTTTCC
CTAAGAAAGGATCAGCACCATGGCTGACTCTCACATTTGAATCCAGGAAG
TGCCATGGCTGCCATAGTGATTGGTCCATGATTTATATTTCCCTCAATTT
TCCATAGAAATTTATCCTATCTAGATACAGTGACAGGTAGGTTTTTTTTT
TTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTAAGGTTTTG
AGGTTTTGGTGAAGACAGCAACCACAAAGTAACACAAAATGCTGTCATAA
GAAAACAAATAAAATACCAAAGAATCTTTGTAGACTTTATGATTCTCCCT
GACAGGAGCTAGTTGATTCTGCTACTATCTCTGTGGCATTCATATTGCTT
GAAAGGCATTATCATTTTATACTGACATTAATGCTCTTTTTCCTTATACA
GCTCTCATTTGTGCTCTTATTATTACNCTTTTTTTTTTGTCCTCTGACAT
TTGTAATCCTGAGAGCCATAGATGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_j03.g1 MSMg01no540_j03.g1 CHROMAT_FILE:
MSMg01no540_j03.g1 PHD_FILE: MSMg01no540_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:53 2005
         (583 letters)



>mm_chr4_20460985_20461967
          Length = 983

 Score =  942 bits (487), Expect = 0.0
 Identities = 513/527 (97%), Gaps = 11/527 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctagatctgacctgtgagtaaatagcaggatgaagctatttgcttatgaaggagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atgctagatctgacctgtgagtaaatagcaggatgaagctatttgcttatgaaggagctc 457

                                                                       
Query: 61  acaactgtttttatgaccacacaggtgtatacagatgacactatgagggaagtaggacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acaactgtttttatgaccacacaggtgtatacagatgacactatgagggaagtaggacta 397

                                                                       
Query: 121 gctactttgttattataactatttttgcaagcctataaaaagtcatgtttccctaagaaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gctactttgttaatataactatttttgcaagcctataaaaagtcatgtttccctaagaaa 337

                                                                       
Query: 181 ggatcagcaccatggctgactctcacatttgaatccaggaagtgccatggctgccatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggatcagcaccatggctgactctcacatttgaatccaggaagtgccatggctgccatagt 277

                                                                       
Query: 241 gattggtccatgatttatatttccctcaattttccatagaaatttatcctatctagatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gattggtccatgatttatatttccctcaattttccatagaaatttatcctatctagatac 217

                                                                       
Query: 301 agtgacaggtaggttttttttttttgttttgttttgttttgttttgttttgttttgtttt 360
           |||||||||||||  |||||||||||       |||||||||||||||||||||||  ||
Sbjct: 216 agtgacaggtagg--ttttttttttg-------ttgttttgttttgttttgttttg--tt 168

                                                                       
Query: 361 tttaaggttttgaggttttggtgaagacagcaaccacaaagtaacacaaaatgctgtcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tttaaggttttgaggttttggtgaagacagcaaccacaaagtaacacaaaatgctgtcat 108

                                                                       
Query: 421 aagaaaacaaataaaataccaaagaatctttgtagactttatgattctccctgacaggag 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 107 aagaaaacaaataaaataccaatgaatctttgtagactttatgattctccctgacagtag 48

                                                          
Query: 481 ctagttgattctgctactatctctgtggcattcatattgcttgaaag 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ctagttgattctgctactatctctgtggcattcatattgcttgaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)