Query= MSMg01no540_o15.b1 MSMg01no540_o15.b1 CHROMAT_FILE:
MSMg01no540_o15.b1 PHD_FILE: MSMg01no540_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:21 2005
(538 letters)
>mm_chr4_98235210_98236146
Length = 937
Score = 1009 bits (522), Expect = 0.0
Identities = 534/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 1 tggtttgtttgtttgcttgtttgtttttatatattttgatgggcctcacatagccaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tggtttgtttgtttgcttgtttgtttttatatattttgatgggcctcacatagccaagga 835
Query: 61 tggctcaagctcactatgtagcagaagctggtcctgaacttctgatctttgtgcctgcct 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 834 tggctcaagctcactatgtagcagaagctggtcttgaacttctgatctttgtgcctgcct 775
Query: 121 ctacctttgattacaggtggtgacaccatggccagctacctacagactcggctggttctc 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 774 ctacctttgattacaggtggtgacaccacggccagctacctacagactcggctggttctc 715
Query: 181 acatattcataaaagaatccaaataggctcttctgtatgctaccctccatacctagtctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 acatattcataaaagaatccaaataggctcttctgtatgctaccctccatacctagtctc 655
Query: 241 tgcaccaaaggacaacctgaaaacaaatggctctcacctctagcagctcgtctccaatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgcaccaaaggacaacctgaaaacaaatggctctcacctctagcagctcgtctccaatcc 595
Query: 301 gcatccgtccgtctgcagcagcaggtccctccggattaatccccaccacgaagatgctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcatccgtccgtctgcagcagcaggtccctccggattaatccccaccacgaagatgctca 535
Query: 361 tccgtgacctgtccttattgccagcgagactgagccccagtccattcttgtccttttcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tccgtgacctgtccttattgccagcgagactgagccccagtccattcttgtccttttcca 475
Query: 421 gttcgataatgtgtagttctcccggcaggtctgcatatctttgcctgatcttttctatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gttcgataatgtgtagttctcccggcaggtctgcatatctttgcctgatcttttctatat 415
Query: 481 taaacatgaaaaaaaaatagagcatgagtctgcattaaggagacatgagcactctccc 538
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 414 taaacatg-aaaaaaaatagagcatgagtctgcattaaggagacatgagcattctccc 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space: 489456
Effective search space used: 489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_o15.g1 MSMg01no540_o15.g1 CHROMAT_FILE:
MSMg01no540_o15.g1 PHD_FILE: MSMg01no540_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:21 2005
(594 letters)
>mm_chr4_98063873_98064866
Length = 994
Score = 1125 bits (582), Expect = 0.0
Identities = 591/594 (99%)
Strand = Plus / Plus
Query: 1 acttttaaaaccttgaatttttgagacagtccagtgtttcccagttcttacagggggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttaaaaccttgaatttttgagacagtccagtgtttcccagttcttacagggggctt 260
Query: 61 aataattattcataggtcaaacacccaagcagcctgaacttgcttgctttgttaaagttt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataattattcgtaggtcaaacacccaagcagcctgaacttgcttgctttgttaaagttt 320
Query: 121 taacaactttgcattagtttaagggaagtcaccaaaaggggttagttccttgaagtcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacaactttgcattagtttaagggaagtcaccaaaaggggttagttccttgaagtcttt 380
Query: 181 cctcgtattggtgggagcatgaaattccttgagaaagcaagctagtcagtctgccttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcgtattggtgggagcatgaaattccttgagaaagcaagctagtcagtctgccttaat 440
Query: 241 atttgaagtcacataaccattgctacttaattttttttcttaagctgggatttttgtata 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 atttgaagtcacataaccattgctacttaattttttttcttaaactgggatttttgtata 500
Query: 301 gatttggatgtcttttggagctcctactgtagattctgttgcaaatggaagggtgtgtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttggatgtcttttggagctcctactgtagattctgttgcaaatggaagggtgtgtag 560
Query: 361 tgcttgcgttcatttgtatgtctttattggtgctgaggacagaaagccaggcccttgtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttgcgttcatttgtatgtctttattggtgctgaggacagaaagccaggcccttgtgg 620
Query: 421 tgctgaggacctgctagagtttaagcataggccttggtccactcccgacctggagagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctgaggacctgctagagtttaagcataggccttggtccactcccgacctggagagtga 680
Query: 481 tttgtgctggtcctccatttggaaacgatctgcctgagatttgaagaggctgaaaggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgtgctggtcctccatttggaaacgatctgcctgagatttgaagaggctgaaaggaaa 740
Query: 541 cagttgtagaacttgtgttgtctgtcacagcaagcagtcgttgtcccgccagac 594
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 cagttgtagaacttgtgttgtctgtcacagcaagcagtcgttgtccagccagac 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
