BAC Information

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BAC

Clone NameMSMg01-540P15
Chromosome4 (Build37)
Map Location 106,637,554 - 106,789,551
singlet/doubletdoublet
Overlap geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream gene2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540P15.T7 (MSMg01no540_p15.b1)MSMg01-540P15.TJ (MSMg01no540_p15.g1)
ACCAG607101AG607102
length749755
length of high quality
(start - end)		522 (40 - 561)593 (70 - 662)
definitionCHROMAT_FILE: MSMg01no540_p15.b1 PHD_FILE: MSMg01no540_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:26 2005CHROMAT_FILE: MSMg01no540_p15.g1 PHD_FILE: MSMg01no540_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,789,069 - 106,789,551)(106,637,554 - 106,638,164)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTTTGTCTGTTTTGGGGGTCTTTTGGTTACCACCTACTCCTGGCTTTTT
GGCTTTCTTTGGTTTTACAAGACAGGTTTTTTTTGTTTTGTTTTGTTTTG
TTTTTTTCTGTGGAGAGCCTGGCTGTCCTGGAACTCACTCTGGAACTCAG
GCTGGCCTCAAACTCACAGGGATCCACCTGCCTCTGCGTCCCGGGTAGTG
GGATTAAAGGCCTGTGCCACCATTGCCCAGCCTGAATTTTGTTTTTAAAG
AAAGAACAGGAATAGTTACTGGATAGAAAATTAAAATGAGTAAGTAAATA
TAAACAAACAAACAAACAAAAATCTCGAGCCATGTGTGGCCTGCAGTGCA
TTTCAACAAACGTTCCTGCTATTGTTTCCAAGTGGAAGTGGAGGCTCAGA
GAGCTTCCTCGGACAGCAAGCCTCAGAACAAGCCTGGACCAGCTACAGGA
CCACCTCCCAATGTTTGTCTCTTCTGGCCTGAATCTCTGTGAGCAGATTC
TTGTGATCAGCCAGCCTGGCCAGGCTCCTGAAGATGCTGGGAAAGGCCTC
TTGGAGATGGATGGATAAACCAAGGTCACATGTAACTGAGGCAGCTGGAA
CCCGTGCCTCAGATCCCTGGGNCAACTGATTTACTTGCAAGTCGCATGCA
TGGGGTCCACCAAGAGAGAACATGGTGGGTTGTATCAGTCATTGCTTCT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTAGTTGGTGTGGGAGGGAGAGTGGCC
TGGGAGCCACAGAAACAGAGGCAGATGCCCCCTTCAGGCCCACTCAAGGA
TGCTGTTTGCCCAAGTCCCAACCTGTCCCTCTGGCCTCTGCTGGTGTCAG
TGAGTGAAGTGAAGGGCCATTGATCCACCTTCTCTTGGGGAGGCCACAGC
ACATGCAAGGCTTTCCCTTTAAAAATGTATTAACCTGACCGGAAGCAGGC
CCCAGGTTAAAAATAAACAAAAGTAAGAGGCTAAACAAGTGGGCATGGGA
GGGGTGGGGCTAGAGGCTCATTCGTTCGCTTGCTCGAGAGGGCTCTTAGG
TGCCTTTGAGCTTCACACAGGGGTCTCGGCTTCACACGGGGGTCTAGGCC
CCCGTGGCCCTCCTTCCCTTCCCTTGGGGCTTCTTTTCTTTTGGCTTCAT
CTGTACAGTGGAATCTCTTTAAACCTTAACCCAAAGGGCCTCCCTGAGTG
CAGTGACCGTTTGCCATGAAAGCCTGCTTTGTTAGCCCTGCAGGGCACCC
TGGCCACCCTCTTTGTTCCCCACTGTTTCTCAGGAGTCCTGGCTCCAGCC
TTTGCACATGGAGCTCTCCACTGTGGCTTGCCCAGCTCTCCGGTCTCACT
GGGAACAATTCTTAAGGAGCTGGCTTTCTTCTGGCTGGGTCAGCCCGGAG
GTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_p15.b1 MSMg01no540_p15.b1 CHROMAT_FILE:
MSMg01no540_p15.b1 PHD_FILE: MSMg01no540_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:26 2005
         (522 letters)



>mm_chr4_106788627_106789551
          Length = 925

 Score =  824 bits (426), Expect = 0.0
 Identities = 472/492 (95%), Gaps = 13/492 (2%)
 Strand = Plus / Minus

                                                                       
Query: 35  ttggttaccacctactcctggctttttggctttctttggttttacaagacaggttttttt 94
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||  
Sbjct: 925 ttggttaccacccactcctggctttttggttttctttggttttacaagacaggttttt-- 868

                                                                       
Query: 95  tgttttgttttgttttgtttttttctgtggagagcctggctgtcctggaactcactctgg 154
             |||||  ||||||| |||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 867 --ttttg--ttgtttt-tttttttctgtgta-accctggctgtcctggaactcactctgg 814

                                                                       
Query: 155 aactcaggctggcctcaaactcacagggatccacctgcctctgcgtcccgggtagtggga 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aactcaggctggcctcaaactcacagggatccacctgcctctgcgtcccgggtagtggga 754

                                                                       
Query: 215 ttaaaggcctgtgccaccattgcccagcctgaattttgtttttaaagaaagaacaggaat 274
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttaaaggcctgtgccaccactgcccagcctgaattttgtttttaaagaaagaacaggaat 694

                                                                       
Query: 275 agttactggatagaaaattaaaatgagtaagtaaatat----aaacaaacaaacaaacaa 330
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 693 agttactggatagaaaattaaaatgagtaagtaaatataaacaaacaaacaaacaaacaa 634

                                                                       
Query: 331 aaatctcgagccatgtgtggcctgcagtgcatttcaacaaacgttcctgctattgtttcc 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaatctcgagccatgtgtggcctgcagtgcatttcaacaaacgttcctgctattgtttcc 574

                                                                       
Query: 391 aagtggaagtggaggctcagagagcttcctcggacagcaagcctcagaacaagcctggac 450
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 573 aagtggaagtggaggctcagagagcttcc-cggacagcaagccccagaacaagcctggac 515

                                                                       
Query: 451 cagctacaggaccacctcccaatgtttgtctcttctggcctgaatctctgtgagcagatt 510
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 514 cagctacaggaccacctcccaatgtttgtctcttctggcctgaatccctgtgagcagatt 455

                       
Query: 511 cttgtgatcagc 522
           ||||||||||||
Sbjct: 454 cttgtgatcagc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 925
Length adjustment: 10
Effective length of query: 512
Effective length of database: 915
Effective search space:   468480
Effective search space used:   468480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_p15.g1 MSMg01no540_p15.g1 CHROMAT_FILE:
MSMg01no540_p15.g1 PHD_FILE: MSMg01no540_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:27 2005
         (593 letters)



>mm_chr4_106637372_106638364
          Length = 993

 Score = 1064 bits (550), Expect = 0.0
 Identities = 588/612 (96%), Gaps = 20/612 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctagttggtgtgggagggagagtggcctgggagccacagaaacagaggcagatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tctgctagttggtgtgggagggagagtggcctgggagccacagaaacagaggcagatgcc 242

                                                                       
Query: 61  cccttcaggcccactcaaggatgctgtttgcccaagtcccaacctgtccctctggcctct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctcttcaggcccactcaaggatgctgtttgcccaagtcccaacctgtccctctggcctct 302

                                                                       
Query: 121 gctggtgtcagtgagtgaagtgaagggccattgatccaccttctcttggggaggccacag 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 303 gctggtgtcagtgagtgaagtgaagggccattgatccaccctctcttggggaggccacag 362

                                                                       
Query: 181 cacatgcaaggctttccctttaaaaatgtattaacctgaccggaagcaggccccaggtta 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cacatgcaaggcttt-cctttaaaaatgtattaacctgaccggaagcaggccccaggtta 421

                                                                       
Query: 241 aaaataaacaaaagtaagaggctaaacaagtgggcatgggaggggtggggctagaggctc 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 422 aaaataaacaaaagtaagaggctaaacaagtgggcgtgggaggggtggggctagaggctc 481

                                                                       
Query: 301 attcgttcgcttgctcgagagggctcttaggtgcctttgagcttca-------------- 346
           |||| |||||||||||||||||||||||||||||||||||||||||              
Sbjct: 482 attccttcgcttgctcgagagggctcttaggtgcctttgagcttcacacgggggtctcgg 541

                                                                       
Query: 347 ---caca--ggggtctcggcttcacacgggggtctaggcccccgtggccctccttccctt 401
              ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cttcacacgggggtctcggcttcacacgggggtctaggcccccgtggccctccttccctt 601

                                                                       
Query: 402 cccttggggcttcttttcttttggcttcatctgtacagtggaatctctttaaaccttaac 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cccttggggcttcttttcttttggcttcatctgtacagtggaatctctttaaaccttaac 661

                                                                       
Query: 462 ccaaagggcctccctgagtgcagtgaccgtttgccatgaaagcctgctttgttagccctg 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ccaaagggcctccctgagtgcagtgaccgtttgccatgaaagcctgctttgttagccctg 721

                                                                       
Query: 522 cagggcaccctggccaccctctttgttccccactgtttctcaggagtcctggctccagcc 581
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cagggcaccctggccaccctctttgttccccactgtttctcaggagtcctggctccagcc 781

                       
Query: 582 tttgcacatgga 593
           ||||||||||||
Sbjct: 782 tttgcacatgga 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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