BAC Information

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BAC

Clone NameMSMg01-541A20
Chromosome4 (Build37)
Map Location 154,239,026 - 154,350,686
singlet/doubletdoublet
Overlap geneB230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358
Upstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
Downstream genePlch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541A20.T7 (MSMg01no541_a20.b1)MSMg01-541A20.TJ (MSMg01no541_a20.g1)
ACCAG607158AG607159
length746745
length of high quality
(start - end)		549 (69 - 617)591 (78 - 668)
definitionCHROMAT_FILE: MSMg01no541_a20.b1 PHD_FILE: MSMg01no541_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:33 2005CHROMAT_FILE: MSMg01no541_a20.g1 PHD_FILE: MSMg01no541_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,350,258 - 154,350,686)(154,239,026 - 154,239,616)
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTCAAACAGTGTTCTCTTGTGTCCAACAGGCTGCGCA
CAGTCAGTGTCCCATAAGCACTGGGGACAAAACCAGGATGGAGTGTGACA
AAACCAGGATGGAGTGTGACAAAACCAGGATGGAGTGTGACAAAACCAGG
ATGGAGTGTGGCTGAACAAGATAGGTCTCACAGAGCCCAGGAAAGCCCAG
TGAGACCTCTGCACACAGCTGGAAAAGACCTTGCTGCGTGGGCTTCATCC
TCCCACCATGCCAGTCGAGGTCCCTGTGCTAAGAAGGGAACCCTTCCTCA
GTGGCCACAGGCAGGGACTAGCCTGGGGTCACAGGACTCACAAGGGCTGG
TGCCGGAGGGTCTGCAGTTTGCCCCAGTATTTCTGCCGGAATTTCTCTGC
CCTCTCAACTGCATCCATGGACTCTGGCTGGCTGGCCACAGCTCGCTTCA
CCACCTGCCAACAGCAGAGGTGCCAAATAAGCTCTGCAGAGACAACACAG
GCTGAGGGCAGGCACAGCCTGGTGGGGCTCTGCCCAGCTACACTGGGGCA
CACTTGCACAGCTACAACCACAGTAACAGTGACAGATAGTGCTGTTGTCT
GGTATTTCAGCTTTCAAAGACACCACCTTTGCTACATCCTGCCGCAGCTT
TGGGAACATAAAGAGAACGCGGTGCTTCCCTGGCAGCTACAAAGAT

NNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGTCTAACGAATTTATGAT
GAGATGAAGTTGCCTGCCTTCATAGTGGCCTAGAGAAACAGGATCAGGGA
GGGGAGATGAAGATGCTTAGCAACTTCGGGTGCAAACCTGCCTCTGCTCG
GGAAACAACGTTGCCTTCAGGGACTATGGGGAGGTGGACATGCTGGGCCA
GCCGCAGCCCTCAGTCACAGGAGGAAACCAGTCCCTTACCCCTACCCATG
ACCAGGCCTCCAGAGTGTGGGTGTCTTCTGCACAGGGCGAGGACCAGACA
CCAGCAGAGGCTGACTATGTCCACAGACTTCACTCTGCGCTCTTTTTCCC
TGTGTCCCCTTCACAGACCGCTGCCAAGGAAGCAAGCAACATCTTGGATT
TAGGGAATCCGGGGCAGGCACTAAGCTACTGTTCTTTGGCCATCCTGGCT
GGGGGCAACAATCCTTACCATCTGCGTCTCCGGGTGGCCTGCTTGACCCA
GCTGCAGGAGTATGACAGGGCACTCAGGGACCTGGACCGGGTGCTGCAGC
ACCCTGCAGAGGACAGCGACCTGCCAAGACAGTCGGAAGATTTCTGCACC
CGGGGTCGACTGCTTCTGAGCCTGGGGGATAAAGATGGAGCCGCAGGGGC
CTTTACCCAGGCTTTTGGCCCTGGCACCAGCCCAGGCTCAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_a20.b1 MSMg01no541_a20.b1 CHROMAT_FILE:
MSMg01no541_a20.b1 PHD_FILE: MSMg01no541_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:33 2005
         (549 letters)



>mm_chr4_154349938_154350886
          Length = 949

 Score =  822 bits (425), Expect = 0.0
 Identities = 428/429 (99%)
 Strand = Plus / Minus

                                                                       
Query: 121 gacaaaaccaggatggagtgtggctgaacaagataggtctcacagagcccaggaaagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gacaaaaccaggatggagtgtggctgaacaagataggtctcacagagcccaggaaagccc 690

                                                                       
Query: 181 agtgagacctctgcacacagctggaaaagaccttgctgcgtgggcttcatcctcccacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agtgagacctctgcacacagctggaaaagaccttgctgcgtgggcttcatcctcccacca 630

                                                                       
Query: 241 tgccagtcgaggtccctgtgctaagaagggaacccttcctcagtggccacaggcagggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgccagtcgaggtccctgtgctaagaagggaacccttcctcagtggccacaggcagggac 570

                                                                       
Query: 301 tagcctggggtcacaggactcacaagggctggtgccggagggtctgcagtttgccccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tagcctggggtcacaggactcacaagggctggtgccggagggtctgcagtttgccccagt 510

                                                                       
Query: 361 atttctgccggaatttctctgccctctcaactgcatccatggactctggctggctggcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atttctgccggaatttctctgccctctcaactgcatccatggactctggctggctggcca 450

                                                                       
Query: 421 cagctcgcttcaccacctgccaacagcagaggtgccaaataagctctgcagagacaacac 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 449 cagctcgcttcaccacctgccaacagcagaggtgccaaataagctctgcagagacagcac 390

                                                                       
Query: 481 aggctgagggcaggcacagcctggtggggctctgcccagctacactggggcacacttgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggctgagggcaggcacagcctggtggggctctgcccagctacactggggcacacttgca 330

                    
Query: 541 cagctacaa 549
           |||||||||
Sbjct: 329 cagctacaa 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_a20.g1 MSMg01no541_a20.g1 CHROMAT_FILE:
MSMg01no541_a20.g1 PHD_FILE: MSMg01no541_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:33 2005
         (591 letters)



>mm_chr4_154238826_154239816
          Length = 991

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagtctaacgaatttatgatgagatgaagttgcctgccttcatagtggcctagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagtctaacgaatttatgatgagatgaagttgcctgccttcatagtggcctagagaa 260

                                                                       
Query: 61  acaggatcagggaggggagatgaagatgcttagcaacttcgggtgcaaacctgcctctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggatcagggaggggagatgaagatgcttagcaacttcgggtgcaaacctgcctctgc 320

                                                                       
Query: 121 tcgggaaacaacgttgccttcagggactatggggaggtggacatgctgggccagccgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgggaaacaacgttgccttcagggactatggggaggtggacatgctgggccagccgcag 380

                                                                       
Query: 181 ccctcagtcacaggaggaaaccagtcccttacccctacccatgaccaggcctccagagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctcagtcacaggaggaaaccagtcccttacccctacccatgaccaggcctccagagtg 440

                                                                       
Query: 241 tgggtgtcttctgcacagggcgaggaccagacaccagcagaggctgactatgtccacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtgtcttctgcacagggcgaggaccagacaccagcagaggctgactatgtccacaga 500

                                                                       
Query: 301 cttcactctgcgctctttttccctgtgtccccttcacagaccgctgccaaggaagcaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcactctgcgctctttttccctgtgtccccttcacagaccgctgccaaggaagcaagc 560

                                                                       
Query: 361 aacatcttggatttagggaatccggggcaggcactaagctactgttctttggccatcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatcttggatttagggaatccggggcaggcactaagctactgttctttggccatcctg 620

                                                                       
Query: 421 gctgggggcaacaatccttaccatctgcgtctccgggtggcctgcttgacccagctgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgggggcaacaatccttaccatctgcgtctccgggtggcctgcttgacccagctgcag 680

                                                                       
Query: 481 gagtatgacagggcactcagggacctggaccgggtgctgcagcaccctgcagaggacagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtatgacagggcactcagggacctggaccgggtgctgcagcaccctgcagaggacagc 740

                                                              
Query: 541 gacctgccaagacagtcggaagatttctgcacccggggtcgactgcttctg 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gacctgccaagacagtcggaagatttctgcacccggggtcgactgcttctg 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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