NNNNNGGGGTCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTTCCTTAGCACTAAGAACCAAAACTTCTTCCTCAG
GTGACAGGCTGCTTTTCCTCTGGAGAAGAGGGTCCTGTACGAAAGAGAAA
TCTGAAACGTACTGAGCACCAAGATAGAAGACTATGCAGCTAGAGAGAGC
TGCCCATCTTCACGAAATATTTTACTTTTCTGTGTTACTATTAGTCACTG
AAGATTATTTGTGCATTTTAGAATTTCCATGCAGTTCTGTTTTATATGTA
ATGGCTTTTTAAAAAGCTGTTATTTCTAGCCTCTTGTAAGTTTCACTGAG
GCTTGCTGGGCCATGGTGGCGCACGCCTTTAGTCCCAGCACTTGGGAGGC
AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTTTACAAAGTGAG
TTCCAGGACAGCCAGGGCTGCACAGAGAAACCCTGTCTCAGGAAAAACAA
CAACAACAACACCACCAAAAAGTTTTCTCTGAGGCTGGCCTGAGAAGGTT
GTACTTCTATATCCTGTATAGTTTTTTATGCCTCAATAAATTTTTGAGGT
TAGGATAATATAAGTATGAAAAGTCTAATTTCATTTTTAATTTTGTGAAA
ATTTGAGTTTTTGTAACATACTTTCAAAATTGAAGGATGTATTCCAGCAT
ATGTATGTATGTACACTAGTATGTGTGTAACTTACATAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTAGCATGGGAAAGGAAGTTTTGAACAGGATCCTGATAGC
TCAAGTGGTAAGACTTACAGTTAATTAATAAGTCAGGCTTATGAAGCTAA
ATGCTTCTATACAGCAAAAGACACACCATCATCCAAGCATAATGGTAGCC
TACAGGATAAGAAATATCTTTTGTACCAACTATTAATCTGATAAAGGTTA
GTACCTAATGTACAAGGACCTTTAAACACCTGAAAATCAAGGGAGCTAAA
AAGTTTTCAAAAGATGCCTAGACACACTTTTAAAATGTTCATTATCCTTA
GCCTTTAGGAAGATGCAAATTAAAACGATTTTTAGACTTCATCTTACTCT
ACTCAGAATGACCAAGATCAAATGGCAGCAGATGCTGGTGATACAGGAGG
ATGGTATACGCTTACTCATTGTTGTTGGTACAAATTGCTACTTTTGAAAT
CAGTGCAGAGGAGCCTCCAAAAACTTAAAATAGATCTACCATGATACCCT
GCTATATCTCTCTTGGGCATGTACCCAAATTACTCTATATCTTACTACAG
AGATAGAAACTTGTGCATGCATGGTCATTGCGGTTCTGTCATACTATCCA
GAAGTTGGGAAGAGTCTAAATGTCCATCACCTGATGAATAGATAATGAAA
ATGTGCTACATCC

Query= MSMg01no541_b20.b1 MSMg01no541_b20.b1 CHROMAT_FILE:
MSMg01no541_b20.b1 PHD_FILE: MSMg01no541_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:38 2005
         (580 letters)



>mm_chr4_24507308_24508287
          Length = 980

 Score = 1009 bits (522), Expect = 0.0
 Identities = 563/578 (97%), Gaps = 5/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttccttagcactaagaaccaaaacttcttcctcaggtgacaggctgctttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatttccttagcactaagaaccaaaacttcttcctcaggtgacaggctgctttt 263

                                                                       
Query: 64  cctctggagaagagggtcctgtacgaaagagaaatctgaaacgtactgagcaccaagata 123
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 cctctggagaagggggtcctgtacgaaagagaaatctgaaacgtactaagcaccaagata 323

                                                                       
Query: 124 gaagactatgcagctagagagagctgcccatcttcacgaaatattttacttttctgtgtt 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 gaagactatgcagctagagagagctgcccatcttcacaaaatattttacttttctgtgtt 383

                                                                       
Query: 184 actattagtcactgaagattatttgtgcattttagaatttccatgcagttctgttttata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actattagtcactgaagattatttgtgcattttagaatttccatgcagttctgttttata 443

                                                                       
Query: 244 tgtaatggctttttaaaaagctgttatttctagcctcttgtaagtttcactgaggcttgc 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 tgtaatgactttttaaaaagctgttatttctagcctcttgtaagtttcactgaggtttgc 503

                                                                       
Query: 304 tgggcca-tggtggcgcacgcctttagtcccagcacttgggaggcagaggcaggcagatt 362
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgggc-agtggtggcgcacgcctttagtcccagcacttgggaggcagaggcaggcagatt 562

                                                                       
Query: 363 tctgagttcgaggccagcctggtttacaaagtgagttccaggacagccagggctgcacag 422
           ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 563 tctgagttcaaggccagcctggtttacatagtgagttccaggacagccagggctacacag 622

                                                                       
Query: 423 agaaaccctgtctcaggaaaaacaacaacaacaacaccaccaaaaagttttctctgaggc 482
           |||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 623 agaaaccctgtctcgggaaaaacaacaacaacaacacca---aaaagttttctctgaggc 679

                                                                       
Query: 483 tggcctgagaaggttgtacttctatatcctgtatagttttttatgcctcaataaattttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 tggcctgagaaggttgtacttctatatcctgtatagttttttatgcctcaatacattttt 739

                                                 
Query: 543 gaggttaggataatataagtatgaaaagtctaatttca 580
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaggttaggataatataagtatgaaaagtctaatttca 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)