Query= MSMg01no541_e05.b1 MSMg01no541_e05.b1 CHROMAT_FILE:
MSMg01no541_e05.b1 PHD_FILE: MSMg01no541_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:51 2005
(521 letters)
>mm_chr4_85694467_85695386
Length = 920
Score = 787 bits (407), Expect = 0.0
Identities = 490/527 (92%), Gaps = 24/527 (4%)
Strand = Plus / Plus
Query: 5 gaattcacttttgctgttggctggtgtcagggattttaaccatgtgcctacagtgtgcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttttgctgttggctggtgtcagggattttaaccatgtgcctacagtgtgcag 264
Query: 65 tgcccagacatcgttttggtagacttgagaggggtataggttcctcaaatgaagagacag 124
||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 265 tgcccagacatcggtttggtagacttgagaggggtgtaggtttctcaaatgaagagactg 324
Query: 125 agcagagcaaatcttagttcctcc-ataagtaac-gaaattagaaggatattgtggagca 182
||||||||| ||||||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct: 325 agcagagcagatcttagttcc-cctagaagtaacagaaattagaaggatattgtggagca 383
Query: 183 agaacttgaaaacatgcccactaagtaacctggtattgggcatggcaggggagtcaaaac 242
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 agaacttgaaaatatgcccactaagtaacctggt-gtgggcatggcaggggagtcaaaac 442
Query: 243 atgttctcacccccctgccgtcattttctttccccttggattgctgttttttttttttta 302
|||||||||||||||||||||| |||||||| |||||||||||| |||||||| |
Sbjct: 443 atgttctcacccccctgccgtcgttttcttttcccttggattgc------ttttttttaa 496
Query: 303 ataactgcaagactttgtatattccatattcactacctatctgggccctcctcactaagt 362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ataactgcaagactctgtatattccatattcactacctatctgggccctcctcactaagt 556
Query: 363 cctcagaccagccatgagccctcagactctgaactcctctaccccacatagagacctcga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cctcagaccagccatgagccctcagactctgaactcctctaccccacatagagacctcga 616
Query: 423 agatcagtggttgtagataaaga------g--ctcaggaggtagccttttccccttgcta 474
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct: 617 agatcagtggttgtagataaagactttatgaactcaggaggtagcctttcccccttgcta 676
Query: 475 ggtgtgtgagctcatcttctgcaaaagaggatgtatcagcattctta 521
||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 677 ggtgtgtgagctcatct---gcaa--gag-atgtatcagcattctta 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space: 465010
Effective search space used: 465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_e05.g1 MSMg01no541_e05.g1 CHROMAT_FILE:
MSMg01no541_e05.g1 PHD_FILE: MSMg01no541_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:51 2005
(522 letters)
>mm_chr4_85848747_85849668
Length = 922
Score = 665 bits (344), Expect = 0.0
Identities = 350/352 (99%)
Strand = Plus / Minus
Query: 171 ttgtgttttatctttttcatgtatctaaaagtattattatggtgtctaaatgtaaaacag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ttgtgttttatctttttcatgtatctaaaagtattattatggtgtctaaatgtaaaacag 863
Query: 231 agctttctaaggtgaagtatgaagtaaaaacccagagtgatcagaaaggtattgtgtcct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 agctttctaaggtgaagtatgaagtaaaaacccagagtgatcagaaaggtattgtgtcct 803
Query: 291 gttcctagtttaaatgacagcttcattctttctgtgacacatgaaatcatggaacatttc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gttcctagtttaaatgacagcttcattctttctgtgacacatgaaatcatggaacatttc 743
Query: 351 tccatcaagggtgtcccagagccttagaaaacagcccgcctagggctggacctttcctgt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tccatcaagggtgtcccagagccttagaaaacagcccgcctagggctggacctttcctgt 683
Query: 411 gcttccacagctactgccaagcatcatctcccttggctgaccttcctgcagtggtctcca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gcttccacagctactgccaagcatcatctcccttggctgaccttcctgcagtggtctcca 623
Query: 471 gactctgtctcctacttccacagtcctcccaaccagtgctctgctcaaggga 522
|||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 622 gactctatctcctacttccacagtcatcccaaccagtgctctgctcaaggga 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
