BAC Information

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BAC

Clone NameMSMg01-541I23
Chromosome4 (Build37)
Map Location 146,902,344 - 146,902,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541I23.T7 (MSMg01no541_i23.b1)MSMg01-541I23.TJ (MSMg01no541_i23.g1)
ACCAG607546AG607547
length774755
length of high quality
(start - end)		617 (48 - 664)619 (79 - 697)
definitionCHROMAT_FILE: MSMg01no541_i23.b1 PHD_FILE: MSMg01no541_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:15 2005CHROMAT_FILE: MSMg01no541_i23.g1 PHD_FILE: MSMg01no541_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGACTGCCTTTTCCAGTAAAGCATTTGTCACATTCACTGCA
TTTGTAAGGTTTCTCTCCTGTATGAATTCTATGATGAATACCAAGATGGA
ATTTTCGGGTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCT
CCGGTGTGAATTCTCTGATGAGCTCTCAAATTAAATTTGTGGGTAAAGCA
TTTGTCACATTCACTACATTTGTGAGGTTTCTCTCCTGTATGAATTATCT
GATGAGCTCTCAAATTAAATTTGTGGGTAAAGCATTTGTCACATTCACTA
CATTTGTGAGGTTTCTCTCCTGTATGAATTCTCTGATGATAATTAAGACG
GGATTTGTGAGTAAAGCATTTGTCACATTCACTACATTTGTAAAGTTTCT
CTCCCGTATGATATCTCTGATGAGCTCTCAAATTAAATTTGTGGGTAAAG
CATTTGTCACATTCACTACATTTGTGAGGTTTCTCTCCTGTATGAATTCC
CTGATGACTTCTAAGATGGATCTGATGGGTAAAGCATTTGTCACTTTTAC
TACTTTTGTAAGGTTTCTTTCCATGATAAATTCTCTGCTGAGTTTGAAGT
TTTTCTCTCTGGGTAAGATATTTGTGAAATTCACTGCATTTGTAAGGGTT
CACTCCAGTATTTTTTCGTTTTCACATGTCTTTATGTTTAGAAACAAAAA
ACTTCTCAAATTCTGCATTTCGCT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGATACTCTTCATTTCACG
GTGCAGATAGTTTGTGCATATTCACATGTCATGTTTCCATTGTTCTGTTT
TCCATGTAAAAAAATGTCTTCTTATTCTTCATGTGTATCTTTTTGATTGA
AGTCATTTATTCACATGATATCACTGCAGCCCTTCCTCTCTTCCTAGTAA
CCCCTCACATAAATCTCCCCTCACTCCGCTTCGAAGCAGAAGTATTCATC
TGTCGGATGTAGAGGTAGTGCAGTTCTTTTCCTAGTCTATAGGGATCCTG
AAGATGGTGACTTTTGACTTACAGAAGCACTTAGCATTTATGAGTTTCCA
TTTATTAATTCTTGACTTTATCATCAGAGACACTGGTGTTCTGTTTAGGA
AGTTGTTTCCTGATCTAACAAGTTCAAAGCTACTCTCCACTTTTTGTTCC
ATTAGATTAAGTATGTCTGGATTTATATTGAGGTCTTTGCTTCACTTGGA
CTTGAGTATTATGCAGGGTGTTAAATATGGATCTATATGCTTTTTTCTAC
CTGATGACATCCAGTTAGACCAGCATCATTCATAAAGATGTTCTCTCCTT
TCCGTTGTATAGTTTTAGCTTCTTTGCCAAAATTTAAGTGTCTGTANGTG
TGTGGGTCTATGTTTGGGTCTCCTATTGAATTCATTAATCACCTACTTCT
TTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_i23.g1 MSMg01no541_i23.g1 CHROMAT_FILE:
MSMg01no541_i23.g1 PHD_FILE: MSMg01no541_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:15 2005
         (619 letters)



>mm_chr4_146902144_146903162
          Length = 1019

 Score = 1195 bits (618), Expect = 0.0
 Identities = 618/618 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 260

                                                                       
Query: 61  attgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatctttttgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatctttttgatt 320

                                                                       
Query: 121 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 380

                                                                       
Query: 181 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 440

                                                                       
Query: 241 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 500

                                                                       
Query: 301 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 560

                                                                       
Query: 361 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 620

                                                                       
Query: 421 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagta 680

                                                                       
Query: 481 ttatgcagggtgttaaatatggatctatatgcttttttctacctgatgacatccagttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatgcagggtgttaaatatggatctatatgcttttttctacctgatgacatccagttag 740

                                                                       
Query: 541 accagcatcattcataaagatgttctctcctttccgttgtatagttttagcttctttgcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accagcatcattcataaagatgttctctcctttccgttgtatagttttagcttctttgcc 800

                             
Query: 601 aaaatttaagtgtctgta 618
           ||||||||||||||||||
Sbjct: 801 aaaatttaagtgtctgta 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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