TTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGATTACTACTGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGA
CAGCAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATACCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
GCAAATGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCATACAATATGTACACACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGANACTCAAGA
AGAATGAAGACTGAAGTATGGACACTATGCCCCTCCTTAGAATTTGGGAC
AAAACACN

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTTTTGAAATCTGATGG
TTGGTCAAAGGAACCGCTTATAGTGAGATGACTGCATAGGTGTAAATTCC
ACAGTGAACATGGTAGTTACATTAGTGACAGACATCTCATTTCTCTCAAT
GGCAGGCCCTGGTTGTTCCCTGGAACTAATAAGTAACACTAACAAGGAAG
GGCAGATGGTGCTGCACCCAGGCAGACCCATAAGAGGCAGGGTGTAATTC
TTTATATTTCTTGTGTTGGAATGGGAGTGTAGCTCAGTGGTAGAGCATAC
ACTTAGCATTCACAGGGTGCTGGGTTTGATCCCCAGAATTGGGAGAAAAA
AAATCCCAATGGCTATTGAAAAGATGACCCAAGACCTTGGACCTCACTTC
TTCTTACATTAGGAGGACTTATTTTTAATTCTTTCCCTCTTCCTTCCCTA
TAGATGGAGCACATTGGGTTAGAACACACACAAATATGAACCTATCCCGA
TGGCCAAATACACCTTGCTTTCTTTCTCTGATCTTAAACATTCATTTCCC
TAGAAGGACACAATGGCACACATTTTTAATACCATCACTCAGGAGGCAGA
GGCTGGAAGTTCTCTGAGTTCCAGGCCAGTCAGTGAGACTCTATCTCAAA
AATAATAAATTAATTAAAANNTTTTAAAAGCAGGTCTTTCCTCTAA

Query= MSMg01no541_k07.g1 MSMg01no541_k07.g1 CHROMAT_FILE:
MSMg01no541_k07.g1 PHD_FILE: MSMg01no541_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:23 2005
         (623 letters)



>mm_chr4_122493248_122494270
          Length = 1023

 Score = 1094 bits (566), Expect = 0.0
 Identities = 593/602 (98%), Gaps = 1/602 (0%)
 Strand = Plus / Minus

                                                                        
Query: 21   ttggtcaaaggaaccgcttatagtgagatgactgcataggtgtaaattccacagtgaaca 80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ttggtcaaaggaaccgcttatagtgagatgactgcataggtgtaaattccacagtgaaca 964

                                                                        
Query: 81   tggtagttacattagtgacagacatctcatttctctcaatggcaggccctggttgttccc 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  tggtagttacattagtgacagacatctcatttctctcaatggcaggccctggttgttccc 904

                                                                        
Query: 141  tggaactaataagtaacactaacaaggaagggcagatggtgctgcacccaggcagaccca 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  tggaactaataagtaacactaacaaggaagggcagatggtgctgcacccaggcagaccca 844

                                                                        
Query: 201  taagaggcagggtgtaattctttatatttcttgtgttggaatgggagtgtagctcagtgg 260
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  tcagaggcagggtgtaattctttatatttcttgtgttggaatgggagtgtagctcagtgg 784

                                                                        
Query: 261  tagagcatacacttagcattcacagggtgctgggtttgatccccagaattgggagaaaaa 320
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 783  tagagcacacacttagcattcacagggtgctgggtttgatccccagaattgggggaaaaa 724

                                                                        
Query: 321  aaatcccaatggctattgaaaagatgacccaagaccttggacctcacttcttcttacatt 380
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  aa-tcccaatggctattgaaaagatgacccaagaccttggacctcacttcttcttacatt 665

                                                                        
Query: 381  aggaggacttatttttaattctttccctcttccttccctatagatggagcacattgggtt 440
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 664  aggaggacttatttttaattccttccctcttccttccctatagatggagcacattgggtt 605

                                                                        
Query: 441  agaacacacacaaatatgaacctatcccgatggccaaatacaccttgctttctttctctg 500
            |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 604  agaacacacacaaatatgaacctatcacaatggccaaatacaccttgctttctttctctg 545

                                                                        
Query: 501  atcttaaacattcatttccctagaaggacacaatggcacacatttttaataccatcactc 560
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 544  atcttaaacattcatttccctagaaggacacgatggcacacatttttaataccatcactc 485

                                                                        
Query: 561  aggaggcagaggctggaagttctctgagttccaggccagtcagtgagactctatctcaaa 620
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 484  aggaggcagaggctggaagttctctgagttccagaccagtcagtgagactctatctcaaa 425

              
Query: 621  aa 622
            ||
Sbjct: 424  aa 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)