Query= MSMg01no541_k18.b1 MSMg01no541_k18.b1 CHROMAT_FILE:
MSMg01no541_k18.b1 PHD_FILE: MSMg01no541_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:25 2005
(660 letters)
>mm_chr4_76103460_76104520
Length = 1061
Score = 1241 bits (642), Expect = 0.0
Identities = 654/658 (99%), Gaps = 1/658 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaatgggtcagttc-tcacaagtgttgtagaaccatccaatgtccttaggtgga 62
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatgggtcagttcctcacaagtgttgtagaaccatccaatgtccttaggtgga 263
Query: 63 atggtacctgaacccattctaaatttcaagtccttactaccaatgtcttagcctctagta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggtacctgaacccattctaaatttcaagtccttactaccaatgtcttagcctctagta 323
Query: 123 ctgtctacatgaaactgcattttctttttccgacagttacacaataaatgcatcaccatg 182
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 ctgtctacatgaaactgcattttctttttccaacagttacacaataaatgcatcaccatg 383
Query: 183 cctaaaggaacctctcaccttatgcattgtttgactttctgattctattgcccaaatata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctaaaggaacctctcaccttatgcattgtttgactttctgattctattgcccaaatata 443
Query: 243 aacttcctttaccatctttagctactgaaacttgttttaaaaaaaaattgaacaccccgt 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 aacttcctttaccatctttagctactgaaacttgtttttaaaaaaaattgaacaccccgt 503
Query: 303 ttacacaatactcttctatggctagatttgtttatatccatctatttactacaatactaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttacacaatactcttctatggctagatttgtttatatccatctatttactacaatactaa 563
Query: 363 aatacaataaatacaaacatgacctggatggagtcagtgggaatttatgccaattgaaac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatacaataaatacaaacatgacctggatggagtcagtgggaatttatgccaattgaaac 623
Query: 423 ctaatcatctcttgcagagccactgtgtttaatcctcccttgaatgttctcatgccagga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctaatcatctcttgcagagccactgtgtttaatcctcccttgaatgttctcatgccagga 683
Query: 483 gactggactgggaagagaacagaggaatttaaggcatctgagtgaaagctaatgtgagga 542
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gactgggctgggaagagaacagaggaatttaaggcatctgagtgaaagctaatgtgagga 743
Query: 543 gcaacagactgccttaacagtttctttcagtttgtggtgctggagactcaggatctcagg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcaacagactgccttaacagtttctttcagtttgtggtgctggagactcaggatctcagg 803
Query: 603 catggtaagcaagcagccagcgagctgcacattcctaggcatgccagcttcttagtct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 catggtaagcaagcagccagcgagctgcacattcctaggcatgccagcttcttagtct 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_k18.g1 MSMg01no541_k18.g1 CHROMAT_FILE:
MSMg01no541_k18.g1 PHD_FILE: MSMg01no541_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:25 2005
(594 letters)
>mm_chr4_76249910_76250912
Length = 1003
Score = 1085 bits (561), Expect = 0.0
Identities = 589/603 (97%), Gaps = 9/603 (1%)
Strand = Plus / Minus
Query: 1 agtccccaaaactcacatggtagggagaaaagcaaccccacagtttgtcaccatggaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agtccccaaaactcacatggtagggagaaaagcaaccccacagtttgtcaccatggaaac 744
Query: 61 tgtgacatacatacacatgcaaataaa----tatttcaaaaaacttctgaaatgtcacat 116
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 743 tgtgacatacatacacatgcaaataaataagtatttcaaaaaacttctgtaatgtcacat 684
Query: 117 tcagctatgattgaggataaatgaaatactagaaacacaaagattacccaaattaaatag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcagctatgattgaggataaatgaaatactagaaacacaaagattacccaaattaaatag 624
Query: 177 aaagttgaggtaagctgttataattttagttctgagtcatgtttttatgacggaacaata 236
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 623 aaagttgaggtaagcttttataattttagttctgagtcatgtttttatgagggaacaata 564
Query: 237 tgaatattgatatctaaaatagagtgaatatgacagtatgtaattcatgcattgcctatt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgaatattgatatctaaaatagagtgaatatgacagtatgtaattcatgcattgcctatt 504
Query: 297 tattttattcacataaaatattgctcagaaacacattttgaagaattgagagagaatgtg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tattttattcacataaaatattgctcagaaacacattttgaagaattgagagagaatgtg 444
Query: 357 ttagggaaagtggttagataaagtatcttcgacatcactt-----tagagttctctacgg 411
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 443 ttagggaaagtggttagataaagtatcttcgacatcactttaggatagagttctctacgg 384
Query: 412 tgactctggatggaaaagcttagacaggtgccttgtgttaatggatgaaagttagggtga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgactctggatggaaaagcttagacaggtgccttgtgttaatggatgaaagttagggtga 324
Query: 472 gttgcatttctatacacaccaaaggcaatgatcaaatttcacacttagaaatacagatca 531
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 323 gttgcatttctatacacaccaaaggcaatgatcagatttcacacttagaaatacagatca 264
Query: 532 aagtgatgagtcctggtgtgacgggtaaagaactcgaatagttcctatattccctccatc 591
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagtgatgagtcctggtgtgacaggtaaagaactcgaatagttcctatattccctccatc 204
Query: 592 aca 594
|||
Sbjct: 203 aca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 1003
Length adjustment: 10
Effective length of query: 584
Effective length of database: 993
Effective search space: 579912
Effective search space used: 579912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
