Query= MSMg01no541_m06.b1 MSMg01no541_m06.b1 CHROMAT_FILE:
MSMg01no541_m06.b1 PHD_FILE: MSMg01no541_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:33 2005
(670 letters)
>mm_chr4_17823834_17824903
Length = 1070
Score = 1224 bits (633), Expect = 0.0
Identities = 659/669 (98%), Gaps = 3/669 (0%)
Strand = Plus / Plus
Query: 5 gaattcctttaatcttctcttggctgcttcctttttatttttatcttgatttctcccttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttaatcttctcttggctgcttcctttttatttttatcttgatttctcccttc 264
Query: 65 atgtgaatccctttatcccatgtgtaggcctttgatggctctcctcttcttcctgtttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgaatccctttatcccatgtgtaggcctttgatggctctcctcttcttcctgtttca 324
Query: 125 tgcactgactctcctccttcccttcctgcctttctgactcttcctgccttataaatatgg 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcactgactctcctccttccctgcctgcctttctgactcttcctgccttataaatatgg 384
Query: 185 tgttatgatgctctgtataataatgactttctccctaaaaaaatatttattttgtagttt 244
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 385 tgttatgatgctctgtataataatgactttctccccaaaagaatatttattttgtagttt 444
Query: 245 ctcttggtattgactaaggatcagatttgtatttgaaaatggttgtcacctatttctaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcttggtattgactaaggatcagatttgtatttgaaaatggttgtcacctatttctaat 504
Query: 305 atttttaagtgtctagaaaatattttatatggattttgaaatatttgtttcaggaaaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atttttaagtgtctagaaaatattttatatggattttgaaatatttgtttcaggaaaaaa 564
Query: 365 tggtatttcaaaaattataccttccttttttttcttttttttt---aattaggtattttc 421
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 565 tggtatttcaaaaattataccttccttttttttctttttttttttaaattaagtattttc 624
Query: 422 ttatttaacatttccaatgctatcccaaaagttccccatcccccacctccactcccctac 481
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ttatttaacatttccaatgctatcccaaaagtcccccatcccccacctccactcccctac 684
Query: 482 ccacccactcccacttcttggccctggcattcccctgtactgaggcatataaagtttgca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccacccactcccacttcttggccctggcattcccctgtactgaggcatataaagtttgca 744
Query: 542 agaacaatgggcctctgtttccactgatggcctactaggccatcttctgatacatatgta 601
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaacaatgggcctctctttccactgatggcctactaggccatcttctgatacatatgta 804
Query: 602 cctagagacacgatgagccatctagaggctgccatacccggggatccatcccataatcag 661
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctagagacatgatgagccatctagaggctgccatacccggggatccatcccataatcag 864
Query: 662 cttccaaac 670
|||||||||
Sbjct: 865 cttccaaac 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_m06.g1 MSMg01no541_m06.g1 CHROMAT_FILE:
MSMg01no541_m06.g1 PHD_FILE: MSMg01no541_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:33 2005
(667 letters)
>mm_chr4_17916360_17917426
Length = 1067
Score = 1259 bits (651), Expect = 0.0
Identities = 663/667 (99%)
Strand = Plus / Minus
Query: 1 aggtcttttacactgcaataaacactctcaacattgatcctctgtccagcccctaaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 aggtcttttacactgcaataaacactctcaacattgatcctctgtccagcccctaaaaga 808
Query: 61 cttgttttatccttcttagcttccatatctagtgagaggtaaataattcttttttctttg 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 807 cttgttttatccttcttagcttccatatctagtgagaggtaaatacttcttttttctttg 748
Query: 121 gcattaggatattcaaaatgtaatgtaacttgttttccgtttcctcaatttacttgcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gcattaggatattcaaaatgtaatgtaacttgttttccgtttcctcaatttacttgcact 688
Query: 181 ttaaaaatgttgtctttgaagctccaaggaaatgaaacagaagttaatgattgtacatct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 687 ttaaaaatgttgtctttgaagctccaaggaaatgaaacagaagttaatgattctacatct 628
Query: 241 tggaaccagaaaaatgtcaagagcagtataatgttgagatgaagatgaagagtggggctt 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 tggaaccagaaaaatgtcaagagcagcataatgttgagatgaagatgaagagtggggctt 568
Query: 301 aggtgcaataatattgggtaacaccaggaacaaagcccaagactaagcttgtccttatta 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 567 aggtgcaataatattgggtaacaccagaaacaaagcccaagactaagcttgtccttatta 508
Query: 361 gcaaagcctatgtttatttatgaagatggatacttatagttaagaaatgtctaatgtctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcaaagcctatgtttatttatgaagatggatacttatagttaagaaatgtctaatgtctc 448
Query: 421 tcaatgaaaagataatgacaatgaccagaggtgctcgggtgtgagattttgaaattcaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcaatgaaaagataatgacaatgaccagaggtgctcgggtgtgagattttgaaattcaat 388
Query: 481 ttccaatatggatatgaggtttctaattggtgcagaatgcagttaatttattcttgactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttccaatatggatatgaggtttctaattggtgcagaatgcagttaatttattcttgactt 328
Query: 541 ttgttttccaaggtctgaacaagtaatttcttatacatctatttaaaatcactaagggac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgttttccaaggtctgaacaagtaatttcttatacatctatttaaaatcactaagggac 268
Query: 601 ttaagaccttgtttttaaaacctaatttgaagtttaattttaaaaactaaatcatatgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttaagaccttgtttttaaaacctaatttgaagtttaattttaaaaactaaatcatatgtg 208
Query: 661 ctcctgt 667
|||||||
Sbjct: 207 ctcctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
