Query= MSMg01no542_g14.b1 MSMg01no542_g14.b1 CHROMAT_FILE:
MSMg01no542_g14.b1 PHD_FILE: MSMg01no542_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:26 2005
(716 letters)
>mm_chr4_150288135_150289250
Length = 1116
Score = 1323 bits (684), Expect = 0.0
Identities = 705/712 (99%)
Strand = Plus / Minus
Query: 4 ggaattcggtaaactgttactttctggccagcccatttgcagcagtcggcagcaagcgcg 63
||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct: 754 ggaattcggtaaactgtcattttctggccagcccatttgcagtagtcggcagcaagcgcg 695
Query: 64 tcccaccttcaagccgccttcttgccccggaagtccgcaaggtcgcggtactccgtaacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 694 tcccaccttcaagccgccttcttgccccggaagtccgcaaggtcgcggtactcggtaacc 635
Query: 124 ccagggtgcccagggaccgcagtgtcctccccagaaactttccggcagcgaaccaggtcg 183
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 634 ccagggtgcccagggaccgcagtgtcctccccagaaactttccggctgcgaaccgggtcg 575
Query: 184 gagtgaagctgcgcaagcgcactgagtcccgcaagagcagttcgcgcgcccgcccactac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gagtgaagctgcgcaagcgcactgagtcccgcaagagcagttcgcgcgcccgcccactac 515
Query: 244 gattaggctcagccaatcgacggcagcgccctgacggaagtgagccgtgcgcctctggcg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gattaggctcagccaatcgacggcagcgccctgacggaagtgagccgtgcgcctctggcg 455
Query: 304 gtcagccgactcacttccggcaagcgttgctctgtgggaggcgttctgggtggtccaccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtcagccgactcacttccggcaagcgttgctctgtgggaggcgttctgggtggtccaccc 395
Query: 364 ccgagaagcgttcacagcgtcccggccgaggcgaggcgggtctaggcccctcgcaggtct 423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 394 ccgagaagcgttcacagcgtcccggccgaggcgaggcgggtctagtcccctcgcaggtct 335
Query: 424 ccgagtcagaatttccccctgcgccagcgtggccttaaaggtcagagctcgcccactctc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccgagtcagaatttccccctgcgccagcgtggccttaaaggtcagagctcgcccactctc 275
Query: 484 cgttcgcgccgacctgacctttcgtgggctccgagggggaagttctccgcgatattgaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cgttcgcgccgacctgacctttcgtgggctccgagggggaagttctccgcgatattgaaa 215
Query: 544 acaggaatatcagcggggcgtggtggcacaggtctttgatgcacagtacccgggaatcag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 acaggaatatcagcggggcgtggtggcacaggtctttgatgcacagtacccgggaatcag 155
Query: 604 aggcaggaggatgcccgctaattcgagttctagttcactgaactgcaatgtgggacaatc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aggcaggaggatgcccgctaattcgagttctagttcactgaactgcaatgtgggacaatc 95
Query: 664 tcaaaaaaaagttttttttctttttttggtaaaggtcccaaaggcctttcct 715
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 tcaaaaaaaagttttttttctttttttggtaaaggtcccaaaggcctttcct 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_g14.g1 MSMg01no542_g14.g1 CHROMAT_FILE:
MSMg01no542_g14.g1 PHD_FILE: MSMg01no542_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:26 2005
(334 letters)
>mm_chr4_150117448_150118181
Length = 734
Score = 565 bits (292), Expect = e-165
Identities = 311/318 (97%), Gaps = 2/318 (0%)
Strand = Plus / Plus
Query: 1 tagaacaaagaaaacaaaatagaggagccttaaggaatcctggtggggtgggggattgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaacaaagaaaacaaaatagaggagccttaaggaatcctggtggggtgggggattgag 260
Query: 61 ggactttctggatgacgaaagcagatttcctggagtagggcgtggttccttggttgccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggactttctggatgacgaaagcagatttcctggagtagggcgtggttccttggttaccag 320
Query: 121 catttcaaaatacatcaagcaatgggctttcgggtctgtgcatttctttgtgtatgtctt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttcaaaatacatcaagctatgggctttcgggtctgtgcatttctttgtgtatgtctt 380
Query: 181 gcatgtgaacttaaaagggatcttaaaagggtggcggactgctcagactagagtgcttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgtgaacttaaaagggatcttaaaagggtggcggactgctcagactagagtgcttgc 440
Query: 241 tgtgcctgggtgaggacctgagtactgagctccagaaccagtgtacaagccgaagggggc 300
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcctgggtgaggacctaagtcctgagctccagaaccagtgtacaagccgaagggggc 500
Query: 301 cgggg--gcggggagggg 316
||||| | |||||||||
Sbjct: 501 cggggcaggggggagggg 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
