Query= MSMg01no542_j13.b1 MSMg01no542_j13.b1 CHROMAT_FILE:
MSMg01no542_j13.b1 PHD_FILE: MSMg01no542_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:41 2005
(196 letters)
>mm_chr4_36375567_36376163
Length = 597
Score = 340 bits (176), Expect = 3e-98
Identities = 185/190 (97%), Gaps = 5/190 (2%)
Strand = Plus / Minus
Query: 7 attcaagtaaatta---ccaggcttgtaggcacctctgaacattcttcccattacactga 63
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attcaagtaaa--aaacccaggcttgtaggcacctctgaacattcttcccattacactga 337
Query: 64 taggagaggctggcttccttagcagaactcactcctctatccacccagcacattcttctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taggagaggctggcttccttagcagaactcactcctctatccacccagcacattcttctt 277
Query: 124 ttcatcttacatctaaatgccaaactaaccaaatcttactccctatcctgtctaacgtat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttcatcttacatctaaatgccaaactaaccaaatcttactccctatcctgtctaacgtat 217
Query: 184 acttttcttt 193
||||||||||
Sbjct: 216 acttttcttt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 597
Length adjustment: 8
Effective length of query: 188
Effective length of database: 589
Effective search space: 110732
Effective search space used: 110732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no542_j13.g1 MSMg01no542_j13.g1 CHROMAT_FILE:
MSMg01no542_j13.g1 PHD_FILE: MSMg01no542_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:41 2005
(608 letters)
>mm_chr4_36241293_36242300
Length = 1008
Score = 1141 bits (590), Expect = 0.0
Identities = 599/602 (99%)
Strand = Plus / Plus
Query: 4 ttcatgcatacagcctgtttgtggagtcatttgacatcacagtagcctttaacccttccg 63
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ttcatgcatacagcctgtttgtggagttatttgacatcacagtagcctttaacccttccg 263
Query: 64 tacttcataacccctgatattctaaggcatgagttctctttcctacactgtccctttgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacttcataacccctgatattctaaggcatgagttctctttcctacactgtccctttgtg 323
Query: 124 tattccaaagttccactgtgctctgccaatgaacttttcattcaaaatatcaaagtcctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tattccaaagttccactgtgctctgccaatgaacttttcattcaaaatatcaaagtcctt 383
Query: 184 ttagggcacaactgacaagctccttctgtcatttactattcttgaagtctcaagagaaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttagggcacaactgacaagctccttctgtcatttactattcttgaagtctcaagagaaga 443
Query: 244 taacctgcactcattctccttgaatcttacaaaaacaaagggaatgaatattttgaaatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taacctgcactcattctccttgaatcttacaaaaacaaagggaatgaatattttgaaatt 503
Query: 304 gtgttgtacagttttcctagtctaggtacaaatataacagtaagtgatatgcagagaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgttgtacagttttcctagtctaggtacaaatataacagtaagtgatatgcagagaaaa 563
Query: 364 atgaatgaacaaatgaagtaaaaggagtggggcatggctgacttatggagtagatagaag 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 564 atgaatgaacaaatgaagtaaaaggggtggggcatggctgacttatggagtagatagaag 623
Query: 424 ggagaaagcaggcagaggaagctgaacatggccaacagactaaactggactacaagttga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 624 ggagaaagcaggcagaggaagctgaacatggccaacagactaaactggactacgagttga 683
Query: 484 gagagggtaaaagagagcaagagagtgaaatcctggagaccaagaggccaaaaagtcaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagagggtaaaagagagcaagagagtgaaatcctggagaccaagaggccaaaaagtcaaa 743
Query: 544 aaggggcctgcccagacaaaaaagctgggttatacagggaagagcatctggggaagggaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaggggcctgcccagacaaaaaagctgggttatacagggaagagcatctggggaagggaa 803
Query: 604 aa 605
||
Sbjct: 804 aa 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
