Query= MSMg01no542_k05.b1 MSMg01no542_k05.b1 CHROMAT_FILE:
MSMg01no542_k05.b1 PHD_FILE: MSMg01no542_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:44 2005
(677 letters)
>mm_chr4_8503666_8504742
Length = 1077
Score = 1288 bits (666), Expect = 0.0
Identities = 672/674 (99%)
Strand = Plus / Minus
Query: 4 ggaattctttgagcaatcattttattatgaaaaccagaaaaaggctctgaattggattta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggaattctttgagcaatcattttattatgaaaaccagaaaaaggctctgaattggattta 818
Query: 64 tataatttttcttcacacaatcaatttcctctgcatctgatatataaaacttgtcaaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tataatttttcttcacacaatcaatttcctctgcatctgatatataaaacttgtcaaaag 758
Query: 124 gcaactggatgtaagtatcatctttatatcctgtgaaacaggcaccagagattaagtcca 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gcaactggatgtaaatatcatctttatatcctgtgaaacaggcaccagagattaagtcca 698
Query: 184 gttcaaaacattttctatctcatagtattaacattctgctaagcaaggctgaggaaggct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gttcaaaacattttctatctcatagtattaacattctgctaagcaaggctgaggaaggct 638
Query: 244 ataactatagaaataacttttgtacttaaaatatatgaacatgaaagatatttagatttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ataactatagaaataacttttgtacttaaaatatatgaacatgaaagatatttagatttt 578
Query: 304 tatgctctgagtcttgaatttctgatgcaaatataaaatctttctatcatgctctgattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tatgctctgagtcttgaatttctgatgcaaatataaaatctttctatcatgctctgattt 518
Query: 364 gttttaatatcttcttttgttgacccttcaagactattccctgccttgaatgtcactcac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gttttaatatcttcttttgttgacccttcaagactattccctgccttgaatgtcactcac 458
Query: 424 tctcagatctgggactggtactcatatggcactcagagaaagcatgctgaaagaaactgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctcagatctgggactggtactcatatggcactcagagaaagcatgctgaaagaaactgt 398
Query: 484 atcatcaagtaccttagccacatgcataagatggtcagtgtacctctgcacacaagtgga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atcatcaagtaccttagccacatgcataagatggtcagtgtacctctgcacacaagtgga 338
Query: 544 cccactcaacgacaataacttccagactcaagtgaacaagccctctcccacgaaccagtt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cccactcaacgacaataacttccagactcaagtgaacaagccctctcccacgaaccagtt 278
Query: 604 ttaatacttaaatgaaagcacaaaagccattgcatggaaaaacaagcaaagatcaaccag 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctaatacttaaatgaaagcacaaaagccattgcatggaaaaacaagcaaagatcaaccag 218
Query: 664 ttcctttcacatag 677
||||||||||||||
Sbjct: 217 ttcctttcacatag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_k05.g1 MSMg01no542_k05.g1 CHROMAT_FILE:
MSMg01no542_k05.g1 PHD_FILE: MSMg01no542_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:44 2005
(686 letters)
>mm_chr4_8309174_8310264
Length = 1091
Score = 1166 bits (603), Expect = 0.0
Identities = 665/687 (96%), Gaps = 5/687 (0%)
Strand = Plus / Plus
Query: 5 ggagcaggcatgaaggcagctaccctcagggtttagtagcagctccagtgcccaggatgc 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 ggagcaggcatgaaggcagctaccctcagggtttagtagcagctccggtgcccaggatgc 264
Query: 65 aggacatcagccttgtatcctgcagtcacaagaatgagagtgtacaaagacgtggaatga 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 aggacatcagccttgtatcctgcagtcacaagaatgagcgtgtacaaagacgtggaatga 324
Query: 125 ccttgcagatcattccagcccctcagggcacagatgaaaacagagcctgggatggagagg 184
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 325 ccttgcagattattccagcccctcagggcacagatgaaaacagagcctggaatggaaagg 384
Query: 185 caaacaggtgccacatggggtgctgcaggcagaatgggagaccccagaatcaaggacaac 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 caaacaggtgccacatggggtgctgcaggcagaacgggagaccccagaatcaaggacaac 444
Query: 245 tgggcaaaagccatattccccacccctgtcctaaatgaactgaatggacatttctagagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggcaaaagccatattccccacccctgtcctaaatgaactgaatggacatttctagagg 504
Query: 305 caggatctgggaacatgtattaaaacagcaaggtacatcatgtctccaaaaatgctcac- 363
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 505 caggatctgggaacatgtattaaaacagcacggtacatcatgtctccaaaaatgaagaca 564
Query: 364 tt-cacagaagaactagcccca---ggaggaggagaggctcggagccgagtttgaatccc 419
|| |||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 565 ttacacagaagaattagccccaagaggaggaggagaggctcggagctgagtttgaatccc 624
Query: 420 agatctgccctttgacaaactggtgcctctgaactctgtttccttggctggccctgagaa 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 agatctgccctttgacaaactggtgcctctgaactctgttttcttggctggccctgagaa 684
Query: 480 gatgtgagtacctcactgtatgtagatattcttaaaccctgggggctagcatgctctctg 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 gatgtgagtacctcactgtatgtagaaattcttaaaccctgggggctagcatgctctctg 744
Query: 540 ccacctggaggtgggaagtcagcaagactgctagagttgagtcctggaacctctggctgt 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccacctggaggtgggaagtcaacaagactgctagagttgagtcctggaacctctggctgt 804
Query: 600 gaactgggtgagcttggacacaccattggtcctccacaaaatctccacccaaaagtgcag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaactgggtgagcttggacacaccattggtcctccacaaaatctccacccaaaagtgcag 864
Query: 660 gtgatattcccttctgccaagagtggt 686
|||||||||||| ||| ||||||||||
Sbjct: 865 gtgatattccctcctgacaagagtggt 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1091
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1081
Effective search space: 730756
Effective search space used: 730756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
