BAC Information

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BAC

Clone NameMSMg01-542K09
Chromosome4 (Build37)
Map Location 80,090,463 - 80,090,768
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneTyrp1, D4Bwg0951e, Mpdz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542K09.T7 (MSMg01no542_k09.b1)MSMg01-542K09.TJ (MSMg01no542_k09.g1)
ACCAG608372AG608373
length772768
length of high quality
(start - end)		727 (44 - 770)695 (72 - 766)
definitionCHROMAT_FILE: MSMg01no542_k09.b1 PHD_FILE: MSMg01no542_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:45 2005CHROMAT_FILE: MSMg01no542_k09.g1 PHD_FILE: MSMg01no542_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGG
AATTCACTGGTCCTACCATGTTCCCTACCATCCTGAAGCAGCTGGTCTGA
TAGAAAGTTGGAATGGCCTTTTGAAGACATAGTTACAGTGCCAGTTAGGT
GGCAACAGCATGGAGGGCTGGGGCAGAATTCTTCAGAAGGCAGTATATGC
TTTAAATCAGTGTCCCATATATGATGCAGTTTCTCCCATAGCCAGGATCC
ATGGGTCCAGGAATAAAGGGGTGAAAAGGGGAATAATAATTCTACTCATT
ATCACTCCTAGTGACCCTCCAGGAAAACTTTTGCTTTCTGTCCCAACAAC
TCTAGGTTCTTCTGGCCTAGAAGTTTTTGTTCCAGATGGGGAGTGCTCCT
CCCAGGAGCCACAGCAAACATTCCATTGAACTGGAAGTTCAGACTTCACC
CTGATCATTTTGGGCTTCTAATGCCTTTAAACCAACAGGCTAAGAAAGGA
ATAAAAGCGTTAGGAGGGGTGATAGATCCAGATTACCATGGGGAAATTGG
ATTGCCTTTTCACAATGGAGGTAAGCAGGATTATGTCTGTAATGCAGGAG
ATCCCTTAAGGCATCTCTTAGTACTACCATGTCCTATGATTACAGTCAAT
GGGAAACTACAATAGCCTAATCCAAGCAGGATGACAAAGGACACACACCA
ATCAGGAACGAAGATATGGGTCAGTCCTCCAGGAAAAGAGGCAAGACCTG
CTGAGATGGTTGCTGAGGGTGN

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGCATTCAGGAAAATAGCAAAAGGCCT
TGAATCAGTGCAATGGAGCAGGAAAGTATTAGGACACAAAGACATGCAGG
TTGTGTGTGAGATCAAGAGAGCCCATATGTGATGGGTATTCTTGGTTCCC
AACTTGCCTACATCTGGAATAAACTAAAATCCAAAAATGGATGGCATACC
TATGAATTATTTTTGCTTAATTTGAAGTAAGTGGATAATCTCGATCTGTG
GATGGTTGGGACACACGACTTAACTATGAGCCATGCCTTCTTTGGAAGCA
CATATACGGACATGAAAGAGGGAACATTCGTTCTTTGCCTGCTTTTCCCC
AAGTTACAGCAAGTCTGTTTCTTTACTAGTATTGGAGATTATTTCTTTAG
GATTCCAGTTAGTACTGAAGACCAGACAAGATATTCAGCCTTCTGGACTG
CCAAATTACTGGATTCTTAGTCTTTTTAGTCACAGCAACCTTTGTTGGTT
AACTACTGGACTGTAGCCTGTAAGTCATTCTAATAAATATTACACACAGA
CACACACACACACACAGACACACAGACACAGACACACAGACACACACACA
CACNCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAAGATTCCNGAGAAAACCCTGACTCATACACCATTAACTAACAGTGC
AGTTGAATTTTATTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_k09.g1 MSMg01no542_k09.g1 CHROMAT_FILE:
MSMg01no542_k09.g1 PHD_FILE: MSMg01no542_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:45 2005
         (695 letters)



>mm_chr4_80090463_80091557
          Length = 1095

 Score =  545 bits (282), Expect = e-159
 Identities = 300/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagcattcaggaaaatagcaaaaggccttgaatcagtgcaatggagcaggaaagtatta 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccagcattcgggaaaatagcaaaaggccttgaatcagtgcaatggagcaggaaagtatta 247

                                                                       
Query: 61  ggacacaaagacatgcaggttgtgtgtgagatcaagagagcccatatgtgatgggtattc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggacacaaagacatgcaggatgtgtgtgagatcaagagagcccatatgtgatgggtattc 187

                                                                       
Query: 121 ttggttcccaacttgcctacatctggaataaactaaaatccaaaaatggatggcatacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttggttcccaacttgcctacatctggaataaactaaaatccaaaaatggatggcatacct 127

                                                                       
Query: 181 atgaattatttttgcttaatttgaagtaagtggataatctcgatctgtggatggttggga 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 126 atgaattatttttgcttaatttgaagtaagtggataatcttgatctgtggatggttgggg 67

                                                                       
Query: 241 cacacgacttaactatgagccatgccttctttggaagcacatatacggacatgaaagagg 300
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 66  cacacgacttaactatgagccatgccttctttggaagcccatataaggacatgaaagagg 7

                 
Query: 301 gaacat 306
           ||||||
Sbjct: 6   gaacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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