Query= MSMg01no542_o04.b1 MSMg01no542_o04.b1 CHROMAT_FILE:
MSMg01no542_o04.b1 PHD_FILE: MSMg01no542_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:03 2005
(723 letters)
>mm_chr4_71222737_71223859
Length = 1123
Score = 1357 bits (702), Expect = 0.0
Identities = 714/718 (99%)
Strand = Plus / Plus
Query: 5 gaattcctgaccatttatcgggaagcatctgaaacagtgaataatgtggatactgaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaccatttatcgggaagcatctgaaacagtgaataatgtggatactgaagca 264
Query: 65 gacttgggagaaaaaggttagtcctaatggatgataacataaatccaggaaggactagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacttgggagaaaaaggttagtcctaatggatgataacataaatccaggaaggactagga 324
Query: 125 atgccattctgtatttgcaattacatgaacagtgacaggtaaaattcaactaacaagcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgccattctgtatttgcaattacatgaacagtgacaggtaaaattcaactaacaagcag 384
Query: 185 ttccttaaagtacaaataccaaaaaagagctaaaaggccatttatcaatcagttaatggt 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 ttccttaaagtacaaataccaaaaaagagctaaaaggccatttatcaataagttaatggt 444
Query: 245 gagaagttaataaatatttttgaagatagcaacatgtgagttcaagagaaaagactttta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaagttaataaatatttttgaagatagcaacatgtgagttcaagagaaaagactttta 504
Query: 305 acagtgagagacacccaactaagtttttgtttaaagtacagcttgtaaatgttaaaatgc 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 acagtgagagacacccaactaagtttttttttaaagtacagcttgtaaatgttaaaatgc 564
Query: 365 ataaatattctaaatgttatccaatggaatacgataaattatgatattatttctgagaga 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 ataaatattctaaatgttatccaatggaatatgataaattatgatattatttctgagaga 624
Query: 425 atatctcacagcacttaacagcacttaacattaatgactggcacaacatttatcttaaaa 484
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 atatctcacagcacttaacagcacttaacattaatgattggcacaacatttatcttaaaa 684
Query: 485 atacacagctgagaggaatggctacctttgctgcttagtgtctatgtagacttgccaata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atacacagctgagaggaatggctacctttgctgcttagtgtctatgtagacttgccaata 744
Query: 545 ctattgaaggttttcttgcttgacttataacctctgtaaaatgaggacaataataacata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctattgaaggttttcttgcttgacttataacctctgtaaaatgaggacaataataacata 804
Query: 605 tatttctaaagttctatcaagaattaagaaaggaatgcatgttaataacagaactgccag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatttctaaagttctatcaagaattaagaaaggaatgcatgttaataacagaactgccag 864
Query: 665 gagtgactgtaggcagctgtgagccctgcaataacagactcttgaccacagctggtta 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gagtgactgtaggcagctgtgagccctgcaataacagactcttgaccacagctggtta 922
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_o04.g1 MSMg01no542_o04.g1 CHROMAT_FILE:
MSMg01no542_o04.g1 PHD_FILE: MSMg01no542_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:03 2005
(557 letters)
>mm_chr4_71285106_71286062
Length = 957
Score = 994 bits (514), Expect = 0.0
Identities = 547/558 (98%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 1 agcagcagagtgacctttccttcagagtgccaaagacctgaaagtatctgacagctttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agcagcagagtgacctttccttcagagtgccaaagacctgaaagtatctgacagctttgc 532
Query: 61 tgatggattttgttattctttctttctacacccagcattcaacagacattcaacaaagcg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgatggattttgttattctttctttctacacccagcattcaacagacattcaacaaagca 472
Query: 121 ctttaagttgaaggagtcatctacagatttctgcatattacatcctgccacttaacaatt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 471 ctttaagttgaaggagtcatctacggatttctgcatattacatcctgccacttaacaatt 412
Query: 181 aattagattatgaccgacgagtatttacttttactgtcagttcattcaacagatagaaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aattagattatgaccgacgagtatttacttttactgtcagttcattcaacagatagaagc 352
Query: 241 acatactatccttaaagtaagtgcactgtttactaatgcattcctcttagcttttagtga 300
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 351 acatactatccttaaagtaagtgcactgtttactagtgcattccttttagcttttagtga 292
Query: 301 atagcagatttcaacaaaaccactaccactgaaaatactgacaaaattctctaacaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atagcagatttcaacaaaaccactaccactgaaaatactgacaaaattctctaacaaatt 232
Query: 361 gcattttgcttcccaaaatgaatgaggaaagtaaaaaataaatttaaaaaattaattaat 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gcatttggcttcccaaaatgaatgaggaaagtaaaaaataaatttaaaaaattaattaat 172
Query: 421 taattaattaaatttttaatttaatttaaattaaaaaaaaagggaattttgccagaatca 480
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 171 taattaattaaaattttaatttaatttaaattttaaaaaaagggaattttgccagaatca 112
Query: 481 cttaatcacattacctggcctcagttgttctctggaactgtagagaaagattc-tttttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 111 cttaatcacattacctggcctcagttgttctctggaactgtagagaaagattcttttttt 52
Query: 540 ttccccatttttattagg 557
|| |||||||||||||||
Sbjct: 51 tttcccatttttattagg 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
