Query= MSMg01no543_d15.b1 MSMg01no543_d15.b1 CHROMAT_FILE:
MSMg01no543_d15.b1 PHD_FILE: MSMg01no543_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:31 2005
(649 letters)
>mm_chr4_11746239_11747291
Length = 1053
Score = 395 bits (204), Expect = e-114
Identities = 317/400 (79%), Gaps = 74/400 (18%)
Strand = Plus / Minus
Query: 324 aaaagtgaataattgagaacatgtaatgtcagcctctgactctacatgtgcacatattcg 383
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1053 aaaagtgaataattgagaacatgtaatgttggcctctgactctacatgtgcacatattcg 994
Query: 384 cacatgcaccaggtcacaaat----------------------------------acaca 409
|||||||||||||| |||||| |||||
Sbjct: 993 cacatgcaccaggtaacaaatacacacacacacacacacacacacacacacacacacaca 934
Query: 410 gagagag-------------------------g-gggggggagatacagacagacagac- 442
||||||| | | | | |||| ||||||||||||||
Sbjct: 933 gagagagagagagagagagagagagagagagagagagagagagagacagacagacagaca 874
Query: 443 -------agac--agacagagacagagagaccaacaaaacagcaacaaagggggtagaca 493
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gagacagagacagagacagagacagagagaccaacaaaacagcaacaaagggggtagaca 814
Query: 494 cat----agactttgctggggaagctggcagatttgtagtctcctgctgctataattttg 549
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 catagacagactttgctggggaagctggcagatttgtagtctcctgctgctataattttg 754
Query: 550 ggaccatgtcttcatactctcggcaaagcatggttatcctggagctgagtgatttcttgc 609
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 753 ggaccatgtcttcatactctcagcaaaacatggttatcctggagctgagtgatttcttgc 694
Query: 610 cagcagtggtcccacaatagacactgttacagtgggattc 649
||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cagcagtggtcccacaatagacactgttacagtgggattc 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1053
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1043
Effective search space: 666477
Effective search space used: 666477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_d15.g1 MSMg01no543_d15.g1 CHROMAT_FILE:
MSMg01no543_d15.g1 PHD_FILE: MSMg01no543_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:31 2005
(675 letters)
>mm_chr4_11537735_11538809
Length = 1075
Score = 1187 bits (614), Expect = 0.0
Identities = 662/680 (97%), Gaps = 5/680 (0%)
Strand = Plus / Plus
Query: 1 aaacccaagcttcaggtcacactgtacagctaacttgcagggtgttcatgaccactgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacccaagcttcaggtcacactgtacagctaacttgcagggtgttcatgaccactgggg 260
Query: 61 atgacagttgtggagctatgattgattcgtggaggttgcagtaagactacaacattaatt 120
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacagttgtggagccatgattgactcgtggaggttgcagtaagactacaacattaatt 320
Query: 121 tcgttaggaaactttgtggagaagaccagggtttttcagtgtacagactactcttatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgttaggaaactttgtggagaagaccagggtttttcagtgtacagactactcttatgtt 380
Query: 181 tttttaaggttttaacagatagatttctacctcagttggcatttcattaagggatcccga 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttaaggttttaacagatagatttctacctcagttggcatttcattaagggatcccga 440
Query: 241 gacagccatggagtttgtgacttactaggcctccgagaacggaggaaagcacccgtgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gacagccatggagtttgtgacttactaggcctccgagaacggaggaaagcacctgtgctc 500
Query: 301 attcaatgttttacacggacactaaaatcagcaaacgcataaggcagggatcaggaggga 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 attcaatgttttacacggacactaaaatcagcaaacacataaggcagggatcaggaggga 560
Query: 361 ctaggcacgaactccaccccctctccactcagagctttataaacagtagttaattctcag 420
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgaggcacgaactccatcccctctccactcagagctttataaacagtagttaattctcag 620
Query: 421 caccagtgagggacagtgccagctaaaggacttcacccaaggtctggtgtccagagcttc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 caccagtgagggacagtgccagctaaaggacttcacccaaggtttggtgtccagagcttc 680
Query: 481 tgctgggagctggttctgtaacattagcgcctccacgacagcctgatgagtccttcgatc 540
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgcgagctggttctgtaacattagtgcctccacgacagcctgatgagtccttcgatc 740
Query: 541 gtcttccctccagagggcagagtcacaccgcatgaagttgggtgtgatggtcagcctgag 600
|||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 741 gtcttccctccagaggtcagagtcacaccacatgaagctgggtgtgatggtcagcctgag 800
Query: 601 gagagatgaaggatga-ggtagacatacaactgcactgagtg----cgggcggacacaaa 655
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 gagagatgaaggatgatggtagacatacaactgcactgagtgtgggcgggcggacacaaa 860
Query: 656 gacctacgtttcagtaggac 675
||||||||||||||||||||
Sbjct: 861 gacctacgtttcagtaggac 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
