BAC Information

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BAC

Clone NameMSMg01-543G09
Chromosome4 (Build37)
Map Location 146,805,189 - 146,805,360
singlet/doubletsinglet
Overlap geneLOC627701
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543G09.T7 (MSMg01no543_g09.b1)MSMg01-543G09.TJ (MSMg01no543_g09.g1)
ACCAG608943AG608944
length762754
length of high quality
(start - end)
172 (159 - 330)591 (73 - 663)
definitionCHROMAT_FILE: MSMg01no543_g09.b1 PHD_FILE: MSMg01no543_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:45 2005CHROMAT_FILE: MSMg01no543_g09.g1 PHD_FILE: MSMg01no543_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGAAAATTTTCCTTGTTTCCCAAATAAATGATAAATCTGTTGG
GGATGGTCAACATTTACACAAAATAACAGTAGAATTTATTTTCTCATGGG
GNGAAAAATGAGACTTTAATAATAACTAATGGAGAATAAATTGTAGTCTT
TGGCCAGCAATCACACTTAGGTGGCATGTACCATAAACCTAACACTATTG
CACTGCTCATAAGCACAAGTTGAGGTTAGAGTAAGAAAAGCCATACTAGC
TCATTCAGCTTCTAAGCCAGCTGTCAAAAGTCTCAGCGGCAACATACAGT
TTCTGAAATGGAGAATCACTTTTCATTCTAGGAAGATTTAGGATTAATCA
TAGGAACTTCAATCTTAGGACCCTCATTAAGACACAGATATTCTCAAGGT
AGGTCAAAACCTTCCATCCTGCAGGAAAGCTCATTAAGCCCAGGACATAA
TCAATATGTTTCAGGAAGTCCCTGAAACTAACTAGACACACAAGGCCCCA
TCCTCTTTAAGCATATACAATCACTGAATACTGCTGAAAGACACTCTCAG
ATCATTCCGGCCACCTGAGAGACACCGAGACCAATCAAGCCGCTTAAAAG
AATCTCATATAAACTGAACCCCCCTGGAATATGCTTANAATCACCTGATC
TGCCATGATAAGGCTACTTTCTTTGATTACGCGCGCCATTCTTTATTGTT
ATATCCTACCCN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGGAATTTCATTAAGTTTGTTTCTGC
CTTCTTTGAATTCCTGTGCTTGTTCCCTCTTTATGTCATTTGTCCACATT
GAATGGTGTTCAGATTATATTTTGAGTTTGTTTCATAATTCATTTTGTCA
TGAGAATTGGTATTGCATTAGTGATTTGGGGTAGGGAAATTTTATTAACA
TTGTCAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTTGCTGTGTGTC
ATTTAGGTCAGGTGACAGGGATTTCCATATCAGGTGTTGTGAATAAACTT
TGAGAATCTAGGGTGGTGGGAGGAACTAGGTTACACTTACATTACATATA
TCATTACTTACTTTCATGACTGCACATTTTCAAGATTCCTGGTATCATTT
TGCTTTTAATGTTTATATATATATAAATGTTGTTTACCATTGTCTGTAAT
GGTGTTGTATTTATTTCATCTCTGAATCATTCAGACCTTGATGTGAAATT
TCAAGAAGAATTCAAACTTTGCTCTTCACAGAGACCCTGGGAGAAGGACA
ACAACAAGAATGAGTGTGTCTCTGGTAAATACACCACAGGTCAGTGTCCT
TTCCACATTTCTTTTTTAAAAAATCTCTTTTTATTCAAGTCATCCAAAAC
TTTTAATCTCTCTATGTGGAATGGTATCTAAAGGGCTTATTTTCTATGAT
CTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_g09.b1 MSMg01no543_g09.b1 CHROMAT_FILE:
MSMg01no543_g09.b1 PHD_FILE: MSMg01no543_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:45 2005
         (172 letters)



>mm_chr4_146804989_146805560
          Length = 572

 Score =  325 bits (168), Expect = 9e-94
 Identities = 171/172 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagactttaataataactaatggagaataaattgtagtctttggccagcaatcacactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgagactttaataataactaatggagaataaattgtagtctttggccagcaatcacactt 313

                                                                       
Query: 61  aggtggcatgtaccataaacctaacactattgcactgctcataagcacaagttgaggtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aggtggcatgtaccataaacctaacactattgcactgctcataagcacaagttgaggtta 253

                                                               
Query: 121 gagtaagaaaagccatactagctcattcagcttctaagccagctgtcaaaag 172
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 gagtaagaaaagccatactagctcagtcagcttctaagccagctgtcaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)