Query= MSMg01no544_b24.b1 MSMg01no544_b24.b1 CHROMAT_FILE:
MSMg01no544_b24.b1 PHD_FILE: MSMg01no544_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:41 2005
(650 letters)
>mm_chr4_118642512_118643561
Length = 1050
Score = 1162 bits (601), Expect = 0.0
Identities = 625/633 (98%), Gaps = 1/633 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaactgaggttttcagcagggggttgtggggtggcaagaaatctaagacaaaac 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcaaactgaggctttcagcagggggttgtggggtggcaagaaatctaagacaaagc 264
Query: 65 tgcttttatcagagtgactaggttccagacaggggggtagggggtggacagtgttatggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcttttatcagagtgactaggttccagacaggggggtagggggtggacagtgttatggg 324
Query: 125 cccagagtttagatttaagtgagccttgccttcttctccattacaaatgaacacctgtgg 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccagagtctagatttaagtgagccttgccttcttctccattacaaatgaacacctgtgg 384
Query: 185 tatggcatgcatgaagacacaaaagagtgggctctcctccagtgcaagcagtcaggagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatggcatgcatgaagacacaaaagagtgggctctcctccagtgcaagcagtcaggagat 444
Query: 245 gctctacacgacctggatgtattagttccagtatcttaagcgtccatatctgttgacagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctctacacgacctggatgtattagttccagtatcttaagcgtccatatctgttgacagg 504
Query: 305 atctgcttggaggaactatctcgggagcatacacccttcccttggaggtccccacagtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctgcttggaggaactatctcgggagcatacacccttcccttggaggtccccacagtga 564
Query: 365 gctcgggttggttccatttacagctgttagggttggaatggagcttattgcttgatcagt 424
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 gctcgggttggtcccatttacagctgttagggttggaatggagcttattgcttgattagt 624
Query: 425 tccaaccccaacataggatgtgggttggggacttagccataggcagcagtctctatctac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccaaccccaacataggatgtgggttggggacttagccataggcagcagtctctatctac 684
Query: 485 atctggttgagatgattaagaaacttctagcaggcagatttctgagtttgaggccagctt 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 atctggttgagatgattaagaaacttctagcaggcggatttctgagtttgaggccagctt 744
Query: 545 ggtctacagagtgatttccaggacagacagggctatacagagaaactctgtcttgaaaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggtctacagagtgatttccaggacagacagggctatacagagaaactctgtcttgaaaaa 804
Query: 605 aaagaaagagagagagagagagagagagagaga 637
||| ||||| |||||||||||||||||||||||
Sbjct: 805 aaa-aaagaaagagagagagagagagagagaga 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_b24.g1 MSMg01no544_b24.g1 CHROMAT_FILE:
MSMg01no544_b24.g1 PHD_FILE: MSMg01no544_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:41 2005
(541 letters)
>mm_chr4_118812418_118813358
Length = 941
Score = 619 bits (320), Expect = 0.0
Identities = 323/324 (99%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 215 ttaagacagctcggggagggctggagagatggctcagtggttgagagcactttcagaggt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ttaagacagctcggggagggctggagagatggctcagtggttgagagcactttcagaggt 882
Query: 275 cctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaatgggatccaat 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 cctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaatgggatccaat 822
Query: 335 gccctcttctggtgtgtctgaagagagcaacagtgtactcacataaaataaatacataaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gccctcttctggtgtgtctgaagagagcaacagtgtactcacataaaataaatacataaa 762
Query: 395 taaatcttt-aaaaaaaaaaagaacaattcaagtaaaagttttggactgtatcaggagac 453
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 taaatctttaaaaaaaaaaaagaacaattcaagtaaaagttttggactgtatcaggagac 702
Query: 454 agtgtggagtatgaagtcatgtggtaatatggcaatgttgctttagtgagatgattttga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agtgtggagtatgaagtcatgtggtaatatggcaatgttgctttagtgagatgattttga 642
Query: 514 gtgaacagaacagggtgaccaaat 537
||||||||||||||||||||||||
Sbjct: 641 gtgaacagaacagggtgaccaaat 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
