BAC Information

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BAC

Clone NameMSMg01-544C02
Chromosome4 (Build37)
Map Location 21,706,771 - 21,706,999
singlet/doubletsinglet
Overlap geneUsp45
Upstream genePrdm13, Ccnc, 2610029I01Rik
Downstream gene4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544C02.T7 (MSMg01no544_c02.b1)MSMg01-544C02.TJ (MSMg01no544_c02.g1)
ACCAG609501AG609502
length1,331740
length of high quality
(start - end)
---599 (83 - 681)
definitionCHROMAT_FILE: MSMg01no544_c02.b1 PHD_FILE: MSMg01no544_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:41 2005CHROMAT_FILE: MSMg01no544_c02.g1 PHD_FILE: MSMg01no544_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGTGTGTTGTTTATATTTATTTTTGGCCGCCACTAAAGATCTGCCTCA
CTAAATCTCGCAAACGTAGATATCCCCTCATATTACTTAATCTCGTGTCC
GGTTCCACACTTGTCTGAGGTGTGGTGACGCATGNTGTTAGTAAGCCGCA
ATGAATAGTAGCTATCTGTTCACATCCTATGCAGACCTCCCGCCCTTGTC
GTGACCAATTTGGTTAGCTTGTCGATCATGTACCATCGTTGACGTGCTGC
ACGTTGACAGCTCTATCTCTTATGTTATATACGCGTGCGCAATACTCTGT
ATCTTATTATTTACAGTAGAAAAATACTTCGTTACAGTCCTCTAGAGTAT
GCTTAACTATTATCTTCTCTTATTCATACTTATATCGTAGTATATAGCAT
GCGTTTCCCAGATTTGAACGATTATTCTACATAGATGCCGGCCATGTAGT
AAATTGCAACGTTGATCACTAATTTTCTCTATNTACTNAATACATAAGCT
TGTANAACTAATCCCATNTTAAACTCTCAAAAATAATATGATATGCCCCC
ATATAATTATTATGCTCGAACAATAACCCAGACCTCTCATCCCCATACCC
TCACATACCCGCATAAGATACAATATAAACAGCACATCTATTACTAGATT
CTATAGCACCTGCGCAGCCACGCCGCAAATGAACTATACGCCGGCGATTG
CGCATTAGTATATGCAAGACTTATTTCAATACCGTCAGCTCGATTAATAA
GTATGAAGAGTAGGACTGACTAGGTCGTCACATAATCACACTAGATACGT
CATACATCGTTTTATAGATAAATGACAGAGATAGCAAATGTGACTTGTGT
GATCAAGACGTCGACGATCACTTGCCCATCCTGCTATATTGTATGACGCG
AATTCTATACCACAATACAACGTATAAGGGCTATTGTAGGATATTAGTCG
GCGACACTGATGCTACATATAGAGTAACGGCGNACAGTAGTCACTCCANA
TAATATACGACACATAAAGCATCTCTATTTACATATACTGTGTGAGCGAC
AGATGCGCGTAGTTCATGTTATCTTTGGCGTCGTACCGTAGCTCTTACAA
TATATAATGTAATAAGTATGATGAAGGAACGTCGTAGATATAGCCATCTT
CTTAGACGATATCCGCCAAGTAGGCNCTCTCCACGGTAAGCTGCTTCGCG
TCTGTCCCGTGGAGGGCAGTCATGAACGTCCACGATGAGTCCTTNTNNTT
AGAGGTNNTGTAGGTNTGGAGGTGTGTGCGAGTAACTCACACCGACAGAG
GTAGGCGAGGTGTAGCAGGAGGAAGTNTACG
GAGGGGACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTGTGTCAGTCCAT
TAGGTAGTACAGCGGTTAGGGCTCCTAACTCCTAGGTCTAATATCTTTTT
TCCTGGTCCAATGTGGGTCTTCAGCTGCCATTGTCTGCATAAGTGACAGG
GTAAGGAAAGAGCCCATCATAGGAAGCAGTACTTATTTTCAAACTTTACC
TCTGAGATGATATGCATGGAGATAGACTGTCTTAGTTCAGGGCAATAAAA
AAAAATTACTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG
CTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCAC
AACCATCTGTAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAG
CTACAGTGTACTTACATATAAATAAAATCTTTAAAAAAAAAAAAAATTAC
TATCCACTGAGTAACAGTAAGCACTAGTTAGGGACTCAGGGGCTAGAAGT
CCCTTGCTACAGGGAAGGGTACTGATAGGTCCCGGTTTTAAGAAGCTCCA
TTTGTCTTGGCTCTCTTCTCGTTACCTTCCATAAATGAAGGGTGACTCTC
ATCTACTCTTACTGGGGCCCATCTCCTAGTGCTGTCACATTGTATGTTAG
AATTCAGCCAAGGGATTTTGAAATGCTTGTGGCATAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_c02.g1 MSMg01no544_c02.g1 CHROMAT_FILE:
MSMg01no544_c02.g1 PHD_FILE: MSMg01no544_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:42 2005
         (599 letters)



>mm_chr4_21706571_21707572
          Length = 1002

 Score =  412 bits (213), Expect = e-119
 Identities = 225/231 (97%), Gaps = 5/231 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgtgtcagt---ccattaggtagtacagcggttagggctcctaactcctaggtct 57
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttgtgtcagtggtccattaggtagtacagcggttagggctcctaactcctaggtct 260

                                                                       
Query: 58  aatatcttttttcctggtccaatgtgggtcttcagctgccattgtctgcataagtgacag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatcttttttcctggtccaatgtgggtcttcagctgccattgtctgcataagtgacag 320

                                                                       
Query: 118 ggtaaggaaagagcccatcataggaagcagtacttattttcaaactttacctctgagatg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaaggaaagagcccatcataggaagcagtacttattttcaaactttacctctgagatg 380

                                                              
Query: 178 atatgcatggagatagactgtcttagttcagggcaataaaaaaaaattact 228
           |||||||||||||||||||||||||||||||| |||||||||||  |||||
Sbjct: 381 atatgcatggagatagactgtcttagttcaggtcaataaaaaaa--ttact 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1002
Length adjustment: 10
Effective length of query: 589
Effective length of database: 992
Effective search space:   584288
Effective search space used:   584288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)