Query= MSMg01no544_i04.b1 MSMg01no544_i04.b1 CHROMAT_FILE:
MSMg01no544_i04.b1 PHD_FILE: MSMg01no544_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:12 2005
(549 letters)
>mm_chr4_46664955_46665903
Length = 949
Score = 868 bits (449), Expect = 0.0
Identities = 510/543 (93%), Gaps = 23/543 (4%)
Strand = Plus / Plus
Query: 7 gaattctgtgataatgctgactcttgtagagaacatccaatctcttatgttccaggtcag 66
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgtgataaggctgactctcgtagagaacatccaatctcttatgttccaggtcag 266
Query: 67 aaagagatttttttggtttccataaagaatctgcaaataccttgaccacaatgacataat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaagagatttttttggtttccataaagaatctgcaaataccttgaccacaatgacataat 326
Query: 127 gtgtgaaaataatacagacaagttagtcttgggctgcatagatggctcgggggtcaaggt 186
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 327 gtgtgaaaataatacagacaagttagtcttgggctgtgtagatggct--ggggtcaaggt 384
Query: 187 gcttgctgctcaaactgatgacctacctgagttctgtccctggtccaacacagcagaagg 246
||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 385 gcttgctgctcaagctgatgacctacctgagttctgtccctggtcccacacggcagaagg 444
Query: 247 agagaacgggctccaaaacggtaccatctgacctttgtgcaagcacacacacacacacac 306
||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct: 445 agagaacagactccaaaacggtaccatctgacctttgtgcaag--------------cac 490
Query: 307 acacacacacacacacacacacacacaatgtaatttttaaattaaagttaatgacaattt 366
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 491 acacacacacacacacacacacacacaatgtaatttttaaa------ttaatgacaattt 544
Query: 367 ctttcaagccttaggaataaaatcaaattccctgtgtaactaggtaaaggaggacatggt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctttcaagccttaggaataaaatcaaattccctgtgtaactaggtaaaggaggacatggt 604
Query: 427 gttgtcggggtgctcagtggataagtcgctcactgcagagtctgactgaggtgacttcag 486
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 605 gttgtcggggtgctcagtggataagtcgctcactgcagcgtctgactgaggtgacttcag 664
Query: 487 tccctgactcccacaaggtaaatggaaagaactgactcctacaagccctctcactgacac 546
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 665 tccctgactcccacaaggtaaatggaaagaactgactcctaca-gccctctcactgacac 723
Query: 547 acc 549
|||
Sbjct: 724 acc 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_i04.g1 MSMg01no544_i04.g1 CHROMAT_FILE:
MSMg01no544_i04.g1 PHD_FILE: MSMg01no544_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:12 2005
(574 letters)
>mm_chr4_46839513_46840486
Length = 974
Score = 1042 bits (539), Expect = 0.0
Identities = 551/555 (99%)
Strand = Plus / Minus
Query: 1 tcttgttcacctggagtggccaggacagagggctacaacaagtagaaccatgggactcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcttgttcacctggagtggccaggacagagggctacaacaagtagaaccatgggactcca 496
Query: 61 ggtctgtgtgattccctctccctcacagcctggagtgagcacagaaccacgggctctagg 120
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 495 ggtctgtgtggttccctctccctcacagcctgcagtgagcacagaaccacgggctctagg 436
Query: 121 gcaggctctgccagccatgactggcatctgcgagtccagctcctggtctagaaaaagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcaggctctgccagccatgactggcatctgcgagtccagctcctggtctagaaaaagtga 376
Query: 181 ttagcacacagccgcactcgctgcttcttgtgttgcctacagcttctcttgtaatacaac 240
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 375 ttagcacacagccgcactcactgcttcttgtgttgcctacggcttctcttgtaatacaac 316
Query: 241 agcagaacttagttgggacagagcccagaaggcctgtgaaaactaaatatttatgctctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcagaacttagttgggacagagcccagaaggcctgtgaaaactaaatatttatgctctg 256
Query: 301 gccccttgcagaggaacctggctttctcttgctattgtggaccataggaagaaatcagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gccccttgcagaggaacctggctttctcttgctattgtggaccataggaagaaatcagac 196
Query: 361 taaagttaggtcctgagttcagtgttttctagctgtgtgatcttgggtggctgtcttgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 taaagttaggtcctgagttcagtgttttctagctgtgtgatcttgggtggctgtcttgac 136
Query: 421 ctctctgtgtcttattatacttacccacacattgcttataactatgcctttaagtctaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctctctgtgtcttattatacttacccacacattgcttataactatgcctttaagtctaca 76
Query: 481 ccagtggcctgaagtaatgtcctggcatgagtgagggactagagggatgggggcactaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 ccagtggcctgaagtaatgtcctggcatgagtgagggactagagggatgggggcactaaa 16
Query: 541 ggcactggtcctaaa 555
|||||||||||||||
Sbjct: 15 ggcactggtcctaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
