Query= MSMg01no544_j22.b1 MSMg01no544_j22.b1 CHROMAT_FILE:
MSMg01no544_j22.b1 PHD_FILE: MSMg01no544_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:20 2005
(615 letters)
>mm_chr4_56798097_56799110
Length = 1014
Score = 1081 bits (559), Expect = 0.0
Identities = 601/615 (97%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 1 gctcctctgatttcagttccacatggcacagtgctattgtagtctttctccatgtctgaa 60
||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 761 gctcctctgatttcagtcccacatggtacagtgctattgcagtctttctccatgtctgaa 702
Query: 61 accagctttcaaatcagtaatgctcgcatgttcattgttgagtcgcatggtatatcctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 accagctttcaaatcagtaatgctcgcatgttcattgttgagtcgcatggtatatcctct 642
Query: 121 ggcaagtgctgtgcggcaaggttggtatagcataacataggaagactgtgagcaggatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggcaagtgctgtgcggcaaggttggtatagcataacataggaagactgtgagcaggatgg 582
Query: 181 tagactgttgggggagggtgtcccaaggaaggcttctcggtgtttgagcacattcctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tagactgttgggggagggtgtcccaaggaaggcttctcggtgtttgagcacattcctgct 522
Query: 241 gagaatccgagagggagaccgcatgtgtggctaagagcattccaagcattcagaagcagc 300
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 521 gagaatccgagagggagatcgcatgtgtggctaagagcattctaagcattcagaagcagc 462
Query: 301 tatagtgatgtcttttgttgcattttgaaacagctagacagccagtgactgcaggaagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tatagtgatgtcttttgttgcattttgaaacagctagacagccagtgactgcaggaagac 402
Query: 361 aaaggaggagagaggggtgggcggggcatagggatggcagagaatagctcttttctgggt 420
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 401 agagggggagagaggggtgggcggggcatagggatggcagagaatagctc-tttcagggt 343
Query: 421 cttgaaggtccttattctgaatgaggtagttgtcattaaggagttggaacagggtgcagt 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 342 cttgaaggtccttattctgaatgaggtagttgtcattaaagagttggaacagggtgcagt 283
Query: 481 gttctggctattttagaggattatagtacctgctgtgtcaggaaactagatctacagtga 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 282 gttctggctattttagaggattatagtacctgctgtgttaggaaactagatctacagtga 223
Query: 541 aaaagagtggtgccccaccctgtaagacagggtttctcatgtagcctaagctgttctgga 600
|||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct: 222 aaaagagtggtgccccaccctgcaagacagggtttctcctgtagcctaggctgttctgga 163
Query: 601 attccttttttaaaa 615
|||||||||||||||
Sbjct: 162 attccttttttaaaa 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_j22.g1 MSMg01no544_j22.g1 CHROMAT_FILE:
MSMg01no544_j22.g1 PHD_FILE: MSMg01no544_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:20 2005
(671 letters)
>mm_chr4_56645893_56646963
Length = 1071
Score = 1191 bits (616), Expect = 0.0
Identities = 661/694 (95%), Gaps = 28/694 (4%)
Strand = Plus / Plus
Query: 6 ggattacctacgtgaaaacaaagtaagtcacagtctggccttgcatcatcaaccaaaaca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggattacctacgtgaaaacaaagtaagtcacagtctggccttgcatcatcaaccaaaaca 237
Query: 66 agctaaagttatactgaagacttaattttttacataaacaataaaagaaattgtgtgtgt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agctaaagttatactgaagacttaattttttacataaacaataaaagaaattgtgtgtgt 297
Query: 126 gtgtgtgtgtgtg----------------------------tgtgtgtctgtgtgtctgt 157
||||||||||||| |||||||||||||||||||
Sbjct: 298 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtgtgtctgtgtgtctgt 357
Query: 158 gtctgtgtgtgtctgtgtgtgtctgtgtgtctgtgtctgtgtgcataactatatacacat 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtctgtgtgtgtctgtgtgtgtctgtgtgtctgtgtctgtgtgcataactatatacacat 417
Query: 218 acacacacaaacacatatatcatccatgttttcattcacataaaacaaagtcaaaagaca 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acacacacaaacacatatatcatccatgttttcattcacataaaacaaagtcaaaagaca 477
Query: 278 tagaggaaaaggctggtatttggagctacccagaaataaatataaccttttatactgaga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tagaggaaaaggctggtatttggagctacccagaaataaatataaccttttatactgaga 537
Query: 338 agaagaaaaaggcaaaagacatgctaaataaaacttgttaagataagtaaagaatatcat 397
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 538 agaagaaaaaggcaaaagacatgctaaataaaacatgttaagataagtaaagaatatcat 597
Query: 398 taatgtgttggaaagatttataaggcagtgagaacatgaatagccttatattataaaaca 457
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 taacgtgttggaaagatttataaggcagtgagaacatgaatagccttatattataaaaca 657
Query: 458 gagaggctataaatagagtttgtttccaagccaagaaatacagttagcaaactcaggaag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gagaggctataaatagagtttgtttccaagccaagaaatacagttagcaaactcaggaag 717
Query: 518 agatggccaactttgttattaatcaaagggaaagctctgggctttgacactaacatcctt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agatggccaactttgttattaatcaaagggaaagctctgggctttgacactaacatcctt 777
Query: 578 acacactgctcggagcataaatcggtgcatacttttggaaaggcagctaacaattcatct 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acacactgctcggagcataaatcggtgcatacttttggaaaggcagctaacaattcatct 837
Query: 638 aagacatgttaaaactcgaggaccaatttcagct 671
|||| |||||||||||||| |||||||||||||
Sbjct: 838 aagaggtgttaaaactcgagaaccaatttcagct 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
