BAC Information

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BAC

Clone NameMSMg01-544L10
Chromosome4 (Build37)
Map Location 23,955,260 - 23,955,819
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873
Downstream geneLOC664973, F730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544L10.T7 (MSMg01no544_l10.b1)MSMg01-544L10.TJ (MSMg01no544_l10.g1)
ACCAG609948AG609949
length752746
length of high quality
(start - end)
565 (49 - 613)535 (83 - 617)
definitionCHROMAT_FILE: MSMg01no544_l10.b1 PHD_FILE: MSMg01no544_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:28 2005CHROMAT_FILE: MSMg01no544_l10.g1 PHD_FILE: MSMg01no544_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCTTGCTCAATATCTTATTAGCCTTCTAGCTGAGAGTCAATT
CATTGTCAAAAAGGAAGATTTTTAAAATATTTGATCATTTTAATCATTTA
TATACAGAGCATATGTGTTCACATACATAGATGCCAGAGACCAGAGACAT
TGGATTTCCTGCTACTGGCATTCCTGGGGGTCATGAGGCACATGATGTGG
GTGCCTGAAACTGAGCTTGGATCCTCTGTATAAATACTAGGCACTTTCTC
CAATTTCTAGAATGACTATTCTAAGACAAGACTAAGGACTAGTGTCAGTG
AATTGCACCCAAATTTGTTGAAGGGACCATGTAGCTAACACCAGCACTTG
CTTCTGAGGAGAATTCAACTTATCACAGTACCTGATATAGAGTCTTGATT
TTCTTTTTAAATGTTGTATTTTCCCCACTCCTTAAGTTCCTCTAGATCTT
TTGACCATCTCTACCCAGTCAACTTTAACTTCTTTCCCATAAAACAAAAA
CTCAATATAAGAATAAAAAACTCCAAACCAAGAAAACAAAATAAAACTTT
ACCCCAAAAGAAGGAACATACATGAATAAACAGTGCACACACATACACGC
ATGCACACACACACACATGCATACATGCACACACATACACGCATGCTCGC
ACACACACACACACACACTCTCACACGCGCATACATGCACACACACACTA
AC
NGGGTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCC
CCATTTTTAATGGGGTTCTTTGATTTTTCTGGAGTCTACCTTCTTGAGTT
CTTTATATATATTGGATATAAGTCCCCTATCTGATTTAGGATTGGTAAAG
ATCCTTTCCCAATTTGTTGGTGGCCTTTTAATTGCTCACAAAAGATGTTA
ACTGGTTAATTTAAAATAGAAAAATAATTTATTAAAAGGATGGTATATAT
TACCAGGTATTAGAGGATTTTATTTATTTACTTTTGTGTTTATTACATGT
TTGTACATTTTTATTATTTAATGTTTTCTTTTTTATTAGATATTTTCTTT
ATTTATTCCTAATTTCCCCTCTGAAAATCCCCCCTTCCTCTCCCCCTCCC
CCTGATCCCCAACCAACCCACTCCTGCTTCCTGGCCTTGGCATTCCCCTA
TAGTGGGACAAAGAACCTTCACAGGACCAAAGGCCTCTCCTCACATTGAT
GACCAACTAGGCCATCCTCTGCTACATATGCAGCTTGAGCCACATGTCCC
ACCATGTGTTTTCTTTGATTGGGGGTTTAGTTCCAAGAAACTCAAGCGTA
CTAGTTAGCTCATATTGTTATTCCTCCTACCGGGATGCAAACCCCTTCAG
CTCCTTGGGTACTTTCTGTAACTCCTTCTTTGGGGACCCTGTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_l10.b1 MSMg01no544_l10.b1 CHROMAT_FILE:
MSMg01no544_l10.b1 PHD_FILE: MSMg01no544_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:28 2005
         (565 letters)



>mm_chr4_23955055_23956019
          Length = 965

 Score = 1031 bits (533), Expect = 0.0
 Identities = 554/561 (98%), Gaps = 2/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttgctcaa-tatcttattagccttctagctgagagtcaattcattgtcaaaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 206 ggaattcttgctcaaatatcttattagccttctagctgagagtcaattcattgtcaaaa- 264

                                                                       
Query: 65  ggaagatttttaaaatatttgatcattttaatcatttatatacagagcatatgtgttcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaagatttttaaaatatttgatcattttaatcatttatatacagagcatatgtgttcac 324

                                                                       
Query: 125 atacatagatgccagagaccagagacattggatttcctgctactggcattcctgggggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacatagatgccagagaccagagacattggatttcctgctactggcattcctgggggtc 384

                                                                       
Query: 185 atgaggcacatgatgtgggtgcctgaaactgagcttggatcctctgtataaatactaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgaggcacatgatgtgggtgcctgaaactgagcttggatcctctgtataaatactaggc 444

                                                                       
Query: 245 actttctccaatttctagaatgactattctaagacaagactaaggactagtgtcagtgaa 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actttctccaattcctagaatgactattctaagacaagactaaggactagtgtcagtgaa 504

                                                                       
Query: 305 ttgcacccaaatttgttgaagggaccatgtagctaacaccagcacttgcttctgaggaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgcacccaaatttgttgaagggaccatgtagctaacaccagcacttgcttctgaggaga 564

                                                                       
Query: 365 attcaacttatcacagtacctgatatagagtcttgattttctttttaaatgttgtatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attcaacttatcacagtacctgatatagagtcttgattttctttttaaatgttgtatttt 624

                                                                       
Query: 425 ccccactccttaagttcctctagatcttttgaccatctctacccagtcaactttaacttc 484
           |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| 
Sbjct: 625 ccccaccccttaagttcctctagatcttttgactatctctacccactcaactttaactta 684

                                                                       
Query: 485 tttcccataaaacaaaaactcaatataagaataaaaaactccaaaccaagaaaacaaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttcccataaaacaaaaactcaatataagaataaaaaactccaaaccaagaaaacaaaat 744

                                
Query: 545 aaaactttaccccaaaagaag 565
           |||||||||||||||||||||
Sbjct: 745 aaaactttaccccaaaagaag 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)