BAC Information

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BAC

Clone NameMSMg01-544L15
Chromosome4 (Build37)
Map Location 115,610,986 - 115,611,612
singlet/doubletsinglet
Overlap geneDmbx1
Upstream geneCmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik
Downstream geneFaah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544L15.T7 (MSMg01no544_l15.b1)MSMg01-544L15.TJ (MSMg01no544_l15.g1)
ACCAG609958AG609959
length733737
length of high quality
(start - end)		630 (51 - 680)651 (82 - 732)
definitionCHROMAT_FILE: MSMg01no544_l15.b1 PHD_FILE: MSMg01no544_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:29 2005CHROMAT_FILE: MSMg01no544_l15.g1 PHD_FILE: MSMg01no544_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCGTTTGGCCTCCCACGGCCTATTTTGGCGTGGAGCTGGCGT
GGAGCGGGCGAACTCCAGCAGGGAATTCAGGCTGGGGCGGCGTTTGGGAG
GCAGGGATCAAAAAATGAAGGGCTCTGCCAGGGTCTCTCCTCTCTGGGCC
TCTCATTCCGGTGGCCATAACCCATCTTGGACGGCGACAAGCTAGGGCCT
CTAATGGACCTTTCTGGATCTTGGCTGAAGTTTCTTAAGTTCCCAGACCC
TGATCAGGGGCCTCCAAGGCCCGGGCGGTGCCTTTAGAGCACTTAGGGGG
AAAACATCTTCTTCCTCAAATTCCTATCAATCTGGGGACCAAATCCTGGT
AGGGGGCTGAGGGCTCTCGGTGGTGCAGTTGTGTAGTGACTTGTCGGAGA
AACCAAGGCTAGGCTCTGGGAGAATTGTATCTAGAGGCCGGGCCTTTCGC
CTTTCCCTTTTTGGGAACATTCCAAAGCTGGGAATCCGCGGGGCCTCTAG
TGTAGCCTCAGCGAGGGTTCTGCCTGGGGCGGTAGAAGGACTTTTTCGTT
TTAGAAAAAAGCGGACGGACGGGAGGCCAGGGGTCTTCTGGACTAGTACT
GGTTTTCTGTAGGCAACTTGGGTTTGGGGACGTCGCAGAGAGCTGAAGGC
TTTACTTACTGGATAGGCCTTGGGGCAAACAGG

TTTGTCTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTT
TATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACG
AGATGATCATGTGGTTTCTGTCTTTGAGTTTGTTTATATAATGGATTACA
TTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACC
TACTTGGTCAGGATAGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAG
CGAGAATTTTATTGAGGATTTTTGCATCAATATTCATAAGAGAAATTGGT
CTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGT
AATAGTGGCTACATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCT
TGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGA
TAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAG
ACTATTTATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAA
GGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAAT
TTTTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTA
GAAGGATCTGATGGTGTTTTGGATTTCTTCAGGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_l15.b1 MSMg01no544_l15.b1 CHROMAT_FILE:
MSMg01no544_l15.b1 PHD_FILE: MSMg01no544_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:29 2005
         (630 letters)



>mm_chr4_115610783_115611812
          Length = 1030

 Score = 1205 bits (623), Expect = 0.0
 Identities = 626/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgtttggcctcccacggcctattttggcgtggagctggcgtggagcgggcgaac 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 830 ggaattcgtttggcctcccacggcctgttttggcgtggagctggcgtggagcgggcgaac 771

                                                                       
Query: 64  tccagcagggaattcaggctggggcggcgtttgggaggcagggatcaaaaaatgaagggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tccagcagggaattcaggctggggcggcgtttgggaggcagggatcaaaaaatgaagggc 711

                                                                       
Query: 124 tctgccagggtctctcctctctgggcctctcattccggtggccataacccatcttggacg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tctgccagggtctctcctctctgggcctctcattccggtggccataacccatcttggacg 651

                                                                       
Query: 184 gcgacaagctagggcctctaatggacctttctggatcttggctgaagtttcttaagttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gcgacaagctagggcctctaatggacctttctggatcttggctgaagtttcttaagttcc 591

                                                                       
Query: 244 cagaccctgatcaggggcctccaaggcccgggcggtgcctttagagcacttagggggaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cagaccctgatcaggggcctccaaggcccgggcggtgcctttagagcacttagggggaaa 531

                                                                       
Query: 304 acatcttcttcctcaaattcctatcaatctggggaccaaatcctggtagggggctgaggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acatcttcttcctcaaattcctatcaatctggggaccaaatcctggtagggggctgaggg 471

                                                                       
Query: 364 ctctcggtggtgcagttgtgtagtgacttgtcggagaaaccaaggctaggctctgggaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctctcggtggtgcagttgtgtagtgacttgtcggagaaaccaaggctaggctctgggaga 411

                                                                       
Query: 424 attgtatctagaggccgggcctttcgcctttccctttttgggaacattccaaagctggga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 attgtatctagaggccgggcctttcgcctttccctttttgggaacattccaaagctggga 351

                                                                       
Query: 484 atccgcggggcctctagtgtagcctcagcgagggttctgcctggggcggtagaaggactt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atccgcggggcctctagtgtagcctcagcgagggttctgcctggggcggtagaaggactt 291

                                                                       
Query: 544 tttcgttttagaaaaaagcggacggacgggaggccaggggtcttctggactagtactggt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tttcgttttagaaaaaagcggacggacgggaggccaggggtcttctggactagtactggt 231

                                      
Query: 604 tttctgtaggcaacttgggtttgggga 630
           |||||||||||||||||||||||||||
Sbjct: 230 tttctgtaggcaacttgggtttgggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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