Query= MSMg01no544_m10.b1 MSMg01no544_m10.b1 CHROMAT_FILE:
MSMg01no544_m10.b1 PHD_FILE: MSMg01no544_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:33 2005
(529 letters)
>mm_chr4_141465550_141466478
Length = 929
Score = 826 bits (427), Expect = 0.0
Identities = 508/549 (92%), Gaps = 31/549 (5%)
Strand = Plus / Minus
Query: 6 gaattctttccta----ttactactattcaggaaaaggtgagattgttagcaatagagat 61
||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaattctttcctagaagt---tactattcaggaaaaggtgagattgttagcaatagagat 708
Query: 62 ctaaaactgggcgtggtgacacacacctttaatcccagctctcaggaggcagaggcaggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctaaaactgggcgtggtgacacacacctttaatcccagctctcaggaggcagaggcaggg 648
Query: 122 ggaatctctgaatttgagactaacaacctggtctacacagtgagttccagaacagccagg 181
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 647 ggaatctctgaatttgagactaacaacctggtctacacagtgagttccaggacagccagg 588
Query: 182 gctatagagagagaccaccccttcttaaaaagtgggcagggagtggagacccaggcacga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 587 gctatagagagagaccaccccttcttaaaaagtgggcagggagtggagacccaggcatga 528
Query: 242 aagtctagtagaagaaagaaaggctgcagaggaggaggtcaagggatgcttta-ccagtg 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct: 527 aagtctagtagaagaaagaaaggctgcagaagaggaggtcaagggatgctttaccca-tg 469
Query: 301 atgctcctaagtaggaaggagagctgggactcctcccacctaagacttgatatcagctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atgctcctaagtaggaaggagagctgggactcctcccacctaagacttgatatcagctat 409
Query: 361 gaaaaacctaa-----------------agc-cccgc-ccctctgctgaagctctcgtga 401
||||||||||| | | | | | | | ||||||||||||||||||
Sbjct: 408 gaaaaacctaacacacacacacacacaca-cacacacacac-ctgctgaagctctcgtga 351
Query: 402 tattttccagaagtgccgaacgatggggtttctgctaaacaggagttgttttaag-cact 460
| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 350 tgttttccagaagtgccgaacgacagggtttctgctaaacaggagttgttttaagtcact 291
Query: 461 ggggatctaagggaggtacctggacccttaaggagctgctgaatgtgctaccctgtcccc 520
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 290 ggggatctaagggaggtacctggacccttaaggagctgctgaatatgctaccctgtcccc 231
Query: 521 aggagcagt 529
|||||||||
Sbjct: 230 aggagcagt 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_m10.g1 MSMg01no544_m10.g1 CHROMAT_FILE:
MSMg01no544_m10.g1 PHD_FILE: MSMg01no544_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:33 2005
(435 letters)
>mm_chr4_141287515_141288349
Length = 835
Score = 791 bits (409), Expect = 0.0
Identities = 430/439 (97%), Gaps = 4/439 (0%)
Strand = Plus / Plus
Query: 1 acagagatccacctgcatcagcctctccagtgcttttacacaaaaacttcctgtttctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagatccacctgcatcagcctctccagtgcttttacacaaaaacttcctgtttctta 260
Query: 61 ggccaggatcacttgcacttgtgaaaggggacagccgctccctcgtccagactccagtcc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ggccaggatcacttgcacttgtgaaaggggacagccgctccctcctccagactccagtcc 320
Query: 121 caccccattccaaacgaccttctctccccagcacctgtaatccgttgtacgcaaagattg 180
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccccattccaaatgaccttcactccccagcacctgtaatccgttgtacgcaaagattg 380
Query: 181 aactttggtcccctctgatagcaggtgccattatctgcctaacttcactgtttagagcta 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttggtcccctctgatagcaggcgccattatctgcctaacttcactgtttagagcta 440
Query: 241 gtgatcgatatttttaaatgcaagaatcagccctgggcaaaactacaaagtgggtcaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgatcgatatttttaaatgcaagaatcagccctgggcaaaactacaaagtgggtcaaag 500
Query: 301 ttcatctgtggcaacctcaacctcactgctccttcctcatttgcttctccctgtcctcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcatctgtggcaacctcaacctcactgctccttcctcatttgcttctccctgtcctcct 560
Query: 361 atactttttgtttgatt----tttgtttttttgagattggatttctctgtgtagccctgg 416
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atactttttgtttgtttgttttttgtttttttgagattggatttctctgtgtagccctgg 620
Query: 417 ctgtcctggaactcactct 435
|||||||||||||||||||
Sbjct: 621 ctgtcctggaactcactct 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
