Query= MSMg01no544_p10.b1 MSMg01no544_p10.b1 CHROMAT_FILE:
MSMg01no544_p10.b1 PHD_FILE: MSMg01no544_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:48 2005
(610 letters)
>mm_chr4_118626551_118627560
Length = 1010
Score = 1036 bits (536), Expect = 0.0
Identities = 583/606 (96%), Gaps = 12/606 (1%)
Strand = Plus / Plus
Query: 5 gaattcctagacttctgggagaggattatgtacaatcagagtacaactactctgctttgc 64
||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagacaactgggagaggatgatgtacaatcagagtacaactactctgctttgc 264
Query: 65 agcaacgggtgattggtccaggccagttattgtttaataacctcagctcaaccaacatca 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 agcaacgggtgattggtccaggccagttattgcttaataacctcagctcaaccaacatca 324
Query: 125 attaattgaaggaaaaaattttttattgtgcctgtcagatgaaaaactaagatacaataa 184
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaattgaaggaaagatttttttattgtgcctgtcagatgaaaaactaagatacaataa 384
Query: 185 aagtaagcgtcatgttcaagattacagctagaagtgggagtttatgtggcacagtctcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtaagcgtcatgttcaagattacagctagaagtgggagtttatgtggcacagtctcag 444
Query: 245 agcctggctctcaggcactgccttgctctgctctggtacacaggctctcaagcaggaggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcctggctctcaggcactgccttgctctgctctggtacacaggctctcaagcaggaggg 504
Query: 305 gaaggatgcaaaggcttcacactgtgtctccttgagctcatagagattgctgagtttcct 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagggatgcaaaggcttcacactgtgtctccttgagctcatagagattgctgagtttcct 564
Query: 365 ccccaggcattgtggagccatggcctctgcagaagcagaagcagaagcaagcacaagact 424
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 ccccaggcattgtggagccatggcctctgcagaagca------------agcacaagact 612
Query: 425 ggactaaaccttcctaagtgagagggggaatggcaggttcaaagctcatctcgtcgtaag 484
|||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 613 ggaccaaaccttcctaagtgagagggggaatggcaggttcaaagctcgtctcatcgtaag 672
Query: 485 atgtcctccatctagtctccacctgaatgtgccaggccacggagctgggttgaaaagacc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atgtcctccatctagtctccacctgaatgtgccaggccacggagctgggttgaaaagacc 732
Query: 545 gggaaagatctatggaaattaagttagaaaattatgagcagtttggtgacatactggaat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gggaaagatctatggaaattaagttagaaaattatgagcagtttggtgacatactggaat 792
Query: 605 tctcag 610
||||||
Sbjct: 793 tctcag 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_p10.g1 MSMg01no544_p10.g1 CHROMAT_FILE:
MSMg01no544_p10.g1 PHD_FILE: MSMg01no544_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:48 2005
(537 letters)
>mm_chr4_118792454_118793392
Length = 939
Score = 1015 bits (525), Expect = 0.0
Identities = 535/539 (99%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 1 gggagggaagatggtcagttgatgtcaatgatggacaccgaggtggcaccatgagtgtgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 739 gggagggaagatggtcagttgatgtcaatgatggacaccgaggtggcaccatgaatgtgt 680
Query: 61 gtgggtgctggtatatatggggagtggcatagcacacttaccttctggggggcgttgatg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtgggtgatggtatatatggggagtggcatagcacacttaccttctggggggcgttgatg 620
Query: 121 acaccagtgttatagccgaactgcagtgatccgagcactgctcctcccacagccaacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acaccagtgttatagccgaactgcagtgatccgagcactgctcctcccacagccaacatg 560
Query: 181 aggcggcccgtcaccttctgcaggaagaaaccacagggttacaggcatgtctgggcccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggcggcccgtcaccttctgcaggaagaaaccacagggttacaggcatgtctgggcccag 500
Query: 241 agtactacagagcaaagtcaatgctggcaggttcccatgttcagatatgcctcgcctgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtactacagagcaaagtcaatgctggcaggttcccatgttcagatatgcctcgcctgac 440
Query: 301 tcctggcaacacatttgtccttctcccaggaaacctggctacttcctggcctcaggtgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcctggcaacacatttgtccttctcccaggaaacctggctacttcctggcctcaggtgcc 380
Query: 361 caaacctgcccagctgacttctagacttctctgag--gagagagcaatcaggtttttctt 418
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 379 caaacctgcccagctgacttctagacttctctgaggagagagagcaatcaggtttttctt 320
Query: 419 tatgcagttagagagcctttggctttccaaggtctcactacccaggtaggagtgatactt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatgcagttagagagcctttggctttccaaggtctcactacccaggtaggagtgatactt 260
Query: 479 acatttcaggtagccccacattgtgggaggaagaggaaccaaccttccctccctcacca 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acatttcaggtagccccacattgtgggaggaagaggaaccaaccttccctccctcacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 939
Length adjustment: 10
Effective length of query: 527
Effective length of database: 929
Effective search space: 489583
Effective search space used: 489583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
