BAC Information

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BAC

Clone NameMSMg01-545G11
Chromosome4 (Build37)
Map Location 140,324,325 - 140,324,873
singlet/doubletsinglet
Overlap genePadi4
Upstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l, Rcc2, Padi6
Downstream genePadi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545G11.T7 (MSMg01no545_g11.b1)MSMg01-545G11.TJ (MSMg01no545_g11.g1)
ACCAG610475AG610476
length729739
length of high quality
(start - end)
549 (35 - 583)354 (64 - 417)
definitionCHROMAT_FILE: MSMg01no545_g11.b1 PHD_FILE: MSMg01no545_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:21 2005CHROMAT_FILE: MSMg01no545_g11.g1 PHD_FILE: MSMg01no545_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCCT
GTGGCGTGTGTCCTTACAAGAGAAGCCACAGAGGGGGAGGAGGCCAAGTG
ACCAGAGCGGCACCACCACAGATCAGGGAATACTGACTGCCACCTGACAG
GAGCTCAGAGAGATGGAGAGTGACCCTCGAGAGTCGCCACAGAATGACAC
CCCCCCCCCAATGGCCACAGGAAGCTAACATTGGGACACAGAAGGTGCTC
CTGGTGGATCCCTGCCTGTGGCCTTCAGCATCCTCTCAGCCACAGCTACC
TGTTTGTTTACCTGTATGTTACCTGATGCTCCCATCCCAGTGCCGTCTTG
TGTCTGCATGAGTTGGTATTTACTAAACAGTAATACGTGGATGAACCGGG
ACCTTCATAAGCCCTGCAAGTGTCATTGTGAACGTGACTGCATTTAGACT
CGCCTCTGGGTGTACCTAGGAGGATGTTTCTAGAGTGGTTTAGTCACACT
GTGGATGTGGGTGGCGCTGTCTGGGGGTCCTAGACCTGCAGCCTCTCGCT
CCTGCCGCCACGCCTTTCCATCGTGATGGACTGAGCCCTAGACCGCGAGC
CAAAATAAGCCCCGCCCTCCTTAAACTAGTTTTTATTGGGTATTTAATCC
CGGTGATGGGAAAAAAATGACGGGGAACAATGTGCCATCTGTGCGGGCAC
AGAGGACAAAGGAGTCACTATGAACTTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCC
GCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACTG
CCTGGCTAGACAGGATATTTTTATGCCACTCAGACTGACCCCAAAGTTAT
TATCCTCTAACGTTAGCCTCCCAAGTGCTGGAATTTTTAGGCATGAAGCG
CCACACTTGACTTAGACTCTGATTCATTCATTCATTCATCCATCCATTCA
CTAATTCATCCATTCATTCACTCATTCATTCATTCATCCATCCATTCATT
AATCCATCCATTCATTCACTCATTCAGTCATTCTCTCATTCATTCATTCA
TTCATTCATTCATTCATTCATTCATTCCTGAGACATGGTCTCTTGTAGCT
CAGGCTGGCCTTGAATTTGCCATGTAGGTAAAGATGACCATAAACTTCTG
ATTCTCCTGTATCCACCTTCACAGACTGGATTATAGACCTGGCTTATGCT
ATGCTAAGGACTGAACCCAAAGCCTTGACCATGCTAGGCAAGGGCTTTAC
CACCTGAACCACATCCCCACTTGAGGCCTTGAATTCTTACCGGGGATCTT
AATTGCTTCCGCAGAATGGGCGGGCAACTTTTTGGAACAAGGGAATCTGG
TAGGGGGAGACGAACAACGTATATGGGTGGTTTTTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_g11.b1 MSMg01no545_g11.b1 CHROMAT_FILE:
MSMg01no545_g11.b1 PHD_FILE: MSMg01no545_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:21 2005
         (549 letters)



>mm_chr4_140324122_140325073
          Length = 952

 Score = 1035 bits (535), Expect = 0.0
 Identities = 545/549 (99%), Gaps = 3/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtcctgtggcgtgtgtccttacaagagaagc-cacagagggggaggaggcca 62
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattcagtccagtggcgtgtgtccttacaagagaagcacacagagggggaggaggcca 263

                                                                       
Query: 63  agtgaccagagcggcaccaccacagatcagggaatactgactgccacctgacaggagctc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgaccagagcggcaccaccacagatcagggaatactgactgccacctgacaggagctc 323

                                                                       
Query: 123 agagagatggagagtgaccctcgagagtcgccacagaatgacacccccccccc--aatgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 324 agagagatggagagtgaccctcgagagtcgccacagaatgacaccccccccccccaatgg 383

                                                                       
Query: 181 ccacaggaagctaacattgggacacagaaggtgctcctggtggatccctgcctgtggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccacaggaagctaacattgggacacagaaggtgctcctggtggatccctgcctgtggcct 443

                                                                       
Query: 241 tcagcatcctctcagccacagctacctgtttgtttacctgtatgttacctgatgctccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagcatcctctcagccacagctacctgtttgtttacctgtatgttacctgatgctccca 503

                                                                       
Query: 301 tcccagtgccgtcttgtgtctgcatgagttggtatttactaaacagtaatacgtggatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcccagtgccgtcttgtgtctgcatgagttggtatttactaaacagtaatacgtggatga 563

                                                                       
Query: 361 accgggaccttcataagccctgcaagtgtcattgtgaacgtgactgcatttagactcgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accgggaccttcataagccctgcaagtgtcattgtgaacgtgactgcatttagactcgcc 623

                                                                       
Query: 421 tctgggtgtacctaggaggatgtttctagagtggtttagtcacactgtggatgtgggtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgggtgtacctaggaggatgtttctagagtggtttagtcacactgtggatgtgggtgg 683

                                                                       
Query: 481 cgctgtctgggggtcctagacctgcagcctctcgctcctgccgccacgcctttccatcgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cgctgtctgggggtcctagacctgcagcctctcgctcctgccgccacgcctttccatcgt 743

                    
Query: 541 gatggactg 549
           |||||||||
Sbjct: 744 gatggactg 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 952
Length adjustment: 10
Effective length of query: 539
Effective length of database: 942
Effective search space:   507738
Effective search space used:   507738
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)