BAC Information

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BAC

Clone NameMSMg01-545I23
Chromosome4 (Build37)
Map Location 21,625,227 - 21,625,569
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik, Prdm13
Downstream geneCcnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545I23.T7 (MSMg01no545_i23.b1)MSMg01-545I23.TJ (MSMg01no545_i23.g1)
ACCAG610593AG610594
length733741
length of high quality
(start - end)
380 (36 - 415)543 (66 - 608)
definitionCHROMAT_FILE: MSMg01no545_i23.b1 PHD_FILE: MSMg01no545_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:34 2005CHROMAT_FILE: MSMg01no545_i23.g1 PHD_FILE: MSMg01no545_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCT
TTTGTTCAACTACTACTGAACATGACACATGCTCTGGAGTGTCATTCCAC
TGGGGGGAGGGGGGACTTTTCTCATTCTAAGAAGTATCAATTGCAAATAG
CTTCTTGGTAAAGCTGGGACCTTGTTTTCACTTCCCCTTCTCCATCTGTA
GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGGTCACAGTTTCTGTAAGCTCATAAATGCATCAACCCTGTTTTG
TCTAGAAGATACTTTTTCCTTGTAGTCATTCACTACCTCGGTCTCTTTAT
GATCTTTCTTCTCCTCTTCTACATGGAGCCCGGAGACTGTATCTATGATA
ATTTTTATGACCGCCCACTGATAACTTTCCAGCCCAAAATCTCCCTCTTA
GATTTTCAGTTCATAGCCTGGGAATCCAATAACAAAACTTGGATATTAGT
GAGAAGTTCAAACAAAAAAAATCTATTCTATAGTATAATAGTTTACCATA
ATAAATGTCTAATCTTATTGAAAGCACAATCTAAGCACACATTCTTTATC
CTCAAATAAATTTGGGGTTTTTTTTGAAAGCCTACTCTTTATCTCCTCAT
TAACTTAATATGTAAAGCTTTATTTCCTTAAAACTATTCTTTTTAATAAT
AATGGTTGTCATCTAATCCTTTCATTCAAAAAG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGCCAGCCAGACCTGCACAGTAAGACCCTGTCT
TAAACAATCCCCAACAAAAGAATAAAACCATCCAACCAAACAACCAAACT
TACCACCTGAAATACTATTTATCTAAAGGTGGATCTGCTGTAAGATTGGT
TAATTCAGTGGTTCAAAAGGGTCCAACCAAGTATTTGGCCACTTCAACAT
GTTGTTTATTTGTTCTTTCAAACTCATCTCTTTACATAACATTCTAAGAA
AGAAAACAATGGATGGCTCTTTGAAAGCTTGTCCAGTGGTTCTAGCAGGG
GGCACAGCTATTTATGTGCCCTTTGAGAGAACATTTGGTTGTTCTCTGTC
TGGGAAGTTTATCCTTTTTTGAGCACAGAGTACCTGAAGGGATGTCCATC
AAGTATTGAGGGAATATGAGATTCCTACCTACCTGACTTCATTAATGGGA
TAGCACATGCCACTTTCATGTTGCCCTCACATTTCTGGATATCCTTTTAA
AANATAAGGGAAAGCACTCACCGTGGCCATCCCCAAAAGCTTGCTTTCCT
TGTTTTGGGGCCAGACAGACTACTCTACTCATAAACAAGATGAAAAGAGC
TGTCATTTTTGACTTAAGATAATCGAGACTCAGGCCTGGAAAGATGGCTT
CACCGTTAAAGGCTAGGCTCACTACCTAAAATATAAGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_i23.g1 MSMg01no545_i23.g1 CHROMAT_FILE:
MSMg01no545_i23.g1 PHD_FILE: MSMg01no545_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:34 2005
         (543 letters)



>mm_chr4_21624629_21625570
          Length = 942

 Score =  574 bits (297), Expect = e-168
 Identities = 333/345 (96%), Gaps = 3/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 200 ctttcaaactcatctctttacataacattctaagaaagaaaacaatggatggctctttga 259
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 941 ctttcaaactcatctctttacataacattctaagaaagaaaacaatgaatggctctttga 882

                                                                       
Query: 260 aagcttgtccagtggttctagcagggggcacagctatttatgtgccctttgagagaacat 319
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 881 aagcttgtccagtgtttctagcagggggcacagctgtttatgtgccctttgagagaacat 822

                                                                       
Query: 320 ttggttgttctctgtctgggaagtttatccttttttgagcacagagtacctgaagggatg 379
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttggttgtcctctgtctgggaaggttatccttttttgagcacagagtacctgaagggatg 762

                                                                       
Query: 380 tccatcaagtattgagggaatatgagattcctacctacctgacttcattaatgggatagc 439
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 761 cccatcaagtattgagggaatatgtgattcctacctacctgacttcattaatgggatagc 702

                                                                       
Query: 440 acatgccactttcatgttgccctcacatttctggatatcc-ttttaaaanataagggaaa 498
           ||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||
Sbjct: 701 acatgccactttcatgttgccctcaca-tcctggatatcctttttaaaa-ataagggaaa 644

                                                        
Query: 499 gcactcaccgtggccatccccaaaagcttgctttccttgttttgg 543
           |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 643 gcactcaccgtggccacccccaaaagcttgctttccttgttttgg 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space:   496756
Effective search space used:   496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)