BAC Information

Click to search

BAC

Clone NameMSMg01-545N17
Chromosome4 (Build37)
Map Location 36,099,205 - 36,099,861
singlet/doubletsinglet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545N17.T7 (MSMg01no545_n17.b1)MSMg01-545N17.TJ (MSMg01no545_n17.g1)
ACCAG610818AG610819
length7551,259
length of high quality
(start - end)		659 (37 - 695)---
definitionCHROMAT_FILE: MSMg01no545_n17.b1 PHD_FILE: MSMg01no545_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:57 2005CHROMAT_FILE: MSMg01no545_n17.g1 PHD_FILE: MSMg01no545_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTCGCAGAGGATGCGCGGAATTCACATGA
TTTCCTTATTAAATATGTCTTTACAAAGAATTACATTGAAAATTATCATT
ATTAAATGAGATTAAACAACTATAACATATTATGGGCCATTAATAAGTCT
TCATTTATATTAAGGACAGAAATATTACCCATAGCCTGAAGAAGCTTACA
GTAATGAAACAATTCATCCTTCCTATTTGAATGTAAGCAATATTTACAAA
AAAGACTTAGTAGTTCATATACTTGCTTTGCTTTTTGATAGCCTCAACAT
TGTTCTTCAAGTTGCTGTAAAATATTTGGTAAACTATGTGACTTGTATGC
CTTATTTTGCTAATATGTAAAACTGACAGAACAACAGATAAGCTCAGTCC
ACAAAAATAACTTAGGAAAGGGAATCAGTGAAAGAAAGACCTTAAAGCCA
ACCTGCTCATTTAAAGAAGTAGAGGCTGAGAAATCCAACTGATTCCAGAG
TAGAAATTAGGGGATTTCTGATGAGTTGATTTGAGAAGGATTACATCAGT
CTTCTAATGAAACACTAAAATGTTGGTACTCCGGCATCACTAAATTGATA
CTGCCATTGTTTTTCACACACCTGGCAACGTGCAGCAAAAAGACATTAGT
AATGGAATCGTCTCTCTCCACTTTGTAATTACCCTGGTGCTTTTCAATCC
TAGTTTGTAGTCAAGTGCCCTGGTTCCAAATTCATACATCAGATGTCTTC
ATTTG

CAGGTGGCCTTGTGCTGGGCGCGGCCTGGTGTTTCCTCCACAACTATTAA
TAGTGAGGGAGCCCGATCCGGATGTGAGTCTCCACACCGCATACACCTAC
AGCACTCTATCAGAAGAGATCAGACACCGGTCTAGCGTAGAACGTCCACT
CTTCGACCACCATACTATCGCCTACTCTATACGACGCTTTCGGCTTCTCC
TGTGTTATATCCCCCAGATTTGTATCTGTCCTGGCGCATGAGCGCATCTA
TCTTATTTATCGACTGCCAAGACCTAATATAATGCACACTAACAGACTGA
GTAGTGTGAGAGGGAGGTGTGTCGGGCGAATATTTACTCACAAACCATTA
CTCTCTTTATCGCTCGCTCTTCTCCATTCTCCTCTTACTATACTATATGT
CAGCGATTTGGAAGTTAGCTCTGCTCACGCGTTTTCTCTCTTCCCCCTCT
CCTCTATTCGCGATACAATATTGTATACTCATGTTTGATATTAATAATGT
CATTCACATACTATATAGATCTACGTTGCGCCGAATCTAGTAAACGAGAA
CCCTCCACTATGGCGATTATCAGCATTTCACCCTTTTGTGACGCTATATA
GCTTATGCCTGTGGTACGTATGAGTGCGGTATAGAGATGCAATATATATA
ACCCCACCCTTCGAAGGACCATATATATCAACGACAAAATATATTCGTGA
CCGGCCTACTCGCATTATCTCCACAAAGAGCTATTAATTCACATGCAGAA
GAGAGAATCTGTCATAATAGTCGTGCGCATCAGTAGAGAGTGTTATCATA
ATGATTGCCGCGAGTATGAACTTCTATTTAACACCGCTGAGCCCACGCAC
CCCAATGATTTATCACCCGGTTATAGCACACGAACAACTACACTTGAACC
ACAAGANCGANAGACGGTATATAATATTCAGCGAGACGTCAGACCGAGAC
GCCATTATTTGCCAGTAGCAATGATAAACGACGGATAACAATCTAGGCAC
GATATAGGCGTCTACGTCTTCACGCATATTATACACTANATTATATACAG
CCTNGACATCGTATATAGGTCGCGTGNCGATGAAGTGTACCACCTTTCCG
ATGTAGACAATTGTGATACGCGATACAAATTACTACATCACTGATTAACT
ACATGATTCATCACTCGAAAGCCACATTATAGCGTGAAGAGTGTCTCGCG
GCGACGACAGTACGGCGACGCCGCACATGAATCTCTACAACCACGATCTA
TATACGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_n17.b1 MSMg01no545_n17.b1 CHROMAT_FILE:
MSMg01no545_n17.b1 PHD_FILE: MSMg01no545_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:57 2005
         (659 letters)



>mm_chr4_36099003_36100061
          Length = 1059

 Score = 1232 bits (637), Expect = 0.0
 Identities = 652/661 (98%), Gaps = 8/661 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcacatga----tttccttattaaatatgtctttacaaagaattacattgaaaatt 58
           ||||||||||||    |||    |||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacatgaaacattt----attaaatatgtctttacaaagaattacattgaaaatt 258

                                                                       
Query: 59  atcattattaaatgagattaaacaactataacatattatgggccattaataagtcttcat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atcattattaaatgagattaaacaactataacatattatgggccattaataagtcttcat 318

                                                                       
Query: 119 ttatattaaggacagaaatattacccatagcctgaagaagcttacagtaatgaaacaatt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttatattaaggacagaaatattacccatagcctgaagaagcttacagtaatgaaacaatt 378

                                                                       
Query: 179 catccttcctatttgaatgtaagcaatatttacaaaaaagacttagtagttcatatactt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 catccttcctatttgaatgtaagcaatatttacaaaaaagacttagtagttcatatactt 438

                                                                       
Query: 239 gctttgctttttgatagcctcaacattgttcttcaagttgctgtaaaatatttggtaaac 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctttgctttttgatagcctcaacattgttcttcaagttgctgtaaaatatttggtaaac 498

                                                                       
Query: 299 tatgtgacttgtatgccttattttgctaatatgtaaaactgacagaacaacagataagct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatgtgacttgtatgccttattttgctaatatgtaaaactgacagaacaacagataagct 558

                                                                       
Query: 359 cagtccacaaaaataacttaggaaagggaatcagtgaaagaaagaccttaaagccaacct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagtccacaaaaataacttaggaaagggaatcagtgaaagaaagaccttaaagccaacct 618

                                                                       
Query: 419 gctcatttaaagaagtagaggctgagaaatccaactgattccagagtagaaattagggga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctcatttaaagaagtagaggctgagaaatccaactgattccagagtagaaattagggga 678

                                                                       
Query: 479 tttctgatgagttgatttgagaaggattacatcagtcttctaatgaaacactaaaatgtt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttctgatgagttgatttgagaaggattacatcagtcttctaatgaaacactaaaatgtt 738

                                                                       
Query: 539 ggtactccggcatcactaaattgatactgccattgtttttcacacacctggcaacgtgca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggtactccggcatcactaaattgatactgccattgtttttcacacacctggcaacgtgca 798

                                                                       
Query: 599 gcaaaaagacattagtaatggaatcgtctctctccactttgtaattaccctggtgctttt 658
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 799 gcaaaaagacattagtaatggaatcgtctctctccactttgcaattaccctggtgctttt 858

            
Query: 659 c 659
           |
Sbjct: 859 c 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |