BAC Information

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BAC

Clone NameMSMg01-546A23
Chromosome4 (Build37)
Map Location 87,236,818 - 87,237,285
singlet/doubletsinglet
Overlap genenone
Upstream gene6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546A23.T7 (MSMg01no546_a23.b1)MSMg01-546A23.TJ (MSMg01no546_a23.g1)
ACCAG610974AG610975
length752680
length of high quality
(start - end)		474 (36 - 509)197 (77 - 273)
definitionCHROMAT_FILE: MSMg01no546_a23.b1 PHD_FILE: MSMg01no546_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:13 2005CHROMAT_FILE: MSMg01no546_a23.g1 PHD_FILE: MSMg01no546_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCTA
GATGAAGTCACTGGGATTTGTGGTGGTTTGTTCATGGTTTAGCACAGCTT
GTACTAAACATGATTGGCTAACCCACACTGTCATCAGAGAGTGCCAACAG
TTGCTTAAAATGAAATATTTATACCCACTTCAGCAGGAGACAGCCATTTT
GCCAACTGAAAATAGGTTGCCAAATATAGCATGAATTTATTGTCCTTGAG
ACTTTGACACACGATAAAAGCGGTATGGATTTTTTTTTAATGCTGCTGTT
CAGCTTTGACAAAAATATTACAATGCTGATGCTTTCATATTCTGCTAGTA
AGAAAGTTAAGTACTGTAATCTTTGAGAGGAATGGGTTTTTACACACACA
CTGAGATGCTTTTTATTTTAATTATTTTTATACTTTTTAAATATCTAGCC
TTAAAAAACCCTGCAAATCCAGGTAAATACTTATGAGTGATACCTACTCT
CATCAAAGTGATAAAGGGATTCCCAGAAGATACCTGTATCTAGCTTTATG
GGGAAGGGTAAAAATTCTGTATGCTCACATCACATATTGAGCATTCAGGG
GGGCTTGGGGGGTCGAATAATGCAATACAGTGTATTTTGGGTATGAAATG
CCAAACCCCAAAAAAGTACCGCTATTTCCTAAAAATCAAGCCTACCAAGT
ACCCCGTTGGAAAGGGCCCCCGGGCATAATAACCCCACCCCTTGAGGAAG
TG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGCTTTTCTGGTATCTTACACGCGTT
CTCGCGACCGGCCAGGAAAGACGCAGCAAACTGGAATCTTCTGCGGCAAA
ACTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGAGC
AAGAGAGAGAAAAGGAACAAGAACAAGAAAGCAAGAGCAAGAGAGAGAAA
AAGCAAGAACAAGAGAGAGAAAAAGGCNAGGAACCAGAGAGAGAAAAGCA
NGACCAGAGAGAGAAAAGCATGACCAGAGAGAGAAGAAGCCTGAACAAGA
AAGCGAGAGGGGAAGGCCGGAAAGGGAAAAAGAAGGCCGACCCGGAAGCT
GGAAAAGAACCTGGACCTGACCGGAAAGCCGGGAAAAAAAAGGGCAAACC
CCCGCCCCTTTAAGGGAATTTTCCCCCCCCCCAGGAAGATATACCCCCGG
AATGGGGGGGCCCCCACCGGGCCCCTTGGGCCTCCCCGAAAAGGGGAGAA
ACCTGGGGGGGGGAAAAAACGCCCCCCCCCCGGGGGGGAAAAATTTTTTT
TTTCCTTTTTTAAAACAACCTTGGTGGTGGCCCCCCTTTTTTATTTGGGG
GCAAAAGTGGGGGGGGGGGCGCCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_a23.b1 MSMg01no546_a23.b1 CHROMAT_FILE:
MSMg01no546_a23.b1 PHD_FILE: MSMg01no546_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:13 2005
         (474 letters)



>mm_chr4_87236614_87237485
          Length = 872

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%), Gaps = 2/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctagatgaagtcactgggatttgtggtggtttgttcatggtttagcacagct 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttagatgaagtcactgggatttgtggtggtttgttcatggtttagcacagct 264

                                                                       
Query: 65  tgtactaaacatgattggctaacccacactgtcatcagagagtgccaacagttgcttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtactaaacatgattggctaacccacactgtcatcagagagtgccaacagttgcttaaa 324

                                                                       
Query: 125 atgaaatatttatacccacttcagcaggagacagccattttgccaactgaaaataggttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaaatatttatacccacttcagcaggagacagccattttgccaactgaaaataggttg 384

                                                                       
Query: 185 ccaaatatagcatgaatttattgtccttgagactttgacacacgataaaagcggtatgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaaatatagcatgaatttattgtccttgagactttgacacacgataaaagcggtatgga 444

                                                                       
Query: 245 tttttttttaatgctgctgttcagctttgacaaaaatattacaatgctgatgctttcata 304
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tttttttt-aatgctgctgttcagctttgacaaaa-tattacaatgctgatgctttcata 502

                                                                       
Query: 305 ttctgctagtaagaaagttaagtactgtaatctttgagaggaatgggtttttacacacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttctgctagtaagaaagttaagtactgtaatctttgagaggaatgggtttttacacacac 562

                                                                       
Query: 365 actgagatgctttttattttaattatttttatactttttaaatatctagccttaaaaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 563 actgagatgctttttattttaattatttttatactttttaaatatttagccttaaaaaac 622

                                                             
Query: 425 cctgcaaatccaggtaaatacttatgagtgatacctactctcatcaaagt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cctgcaaatccaggtaaatacttatgagtgatacctactctcatcaaagt 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space:   399968
Effective search space used:   399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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