Query= MSMg01no546_c05.b1 MSMg01no546_c05.b1 CHROMAT_FILE:
MSMg01no546_c05.b1 PHD_FILE: MSMg01no546_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:20 2005
(484 letters)
>mm_chr4_134150571_134151455
Length = 885
Score = 712 bits (368), Expect = 0.0
Identities = 405/422 (95%), Gaps = 10/422 (2%)
Strand = Plus / Plus
Query: 73 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgcgt 132
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 271
Query: 133 aagaattcacagtggctggggtagcatgggtaagaattcacagtgggtggggtagcatgg 192
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 272 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 331
Query: 193 gtaagaactgcaca-gaacaagccagaaagactgcagcatggcatcacacccctagctaa 251
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtaagaactgcacaagaacaagccagaaagactgcagcatggcatcacacccctagctaa 391
Query: 252 ggagctactggcaattgatggctgccagag--------tctgtcctcggcagagatgctg 303
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 ggagctactggcaactgatggctgccagaggaggagagtctgtcctcggcagagatgctg 451
Query: 304 tcccctcagactctagcctgaacatccggtcctgtgttgatggcactgtttatggacata 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 452 tcccctcagactctagcctgaacatcccgtcctgtgttgatggcactgtttatggacata 511
Query: 364 agcttatgtgacctttaggaggtacacacggctttgctggaggaag-gcatcactgggct 422
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 512 agcttatgtgacctttaggagatacacacggctttgctggaggaagtgcatcactgggct 571
Query: 423 ttgagggtttatagcattggtcaacttcctgttctcactctcaacttcctgtctgtggct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgagggtttatagcattggtcaacttcctgttctcactctcaacttcctgtctgtggct 631
Query: 483 ga 484
||
Sbjct: 632 ga 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space: 414750
Effective search space used: 414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_c05.g1 MSMg01no546_c05.g1 CHROMAT_FILE:
MSMg01no546_c05.g1 PHD_FILE: MSMg01no546_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:20 2005
(507 letters)
>mm_chr4_134324060_134324966
Length = 907
Score = 928 bits (480), Expect = 0.0
Identities = 502/514 (97%), Gaps = 9/514 (1%)
Strand = Plus / Minus
Query: 1 tttgttatttgggttttctgagacaaagtttcactctataccccaggatgccttggaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tttgttatttgggttttctgagacaaagtttcactctataccccaggatgccttggaact 772
Query: 61 tgcaggaatcctcctgcttcagctccatgagcgctatgattactggtctgagccatcgct 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 771 tgcaggaatcctcctgcttcagctccatgagcgctatgattaccggtctgagccatcgct 712
Query: 121 cctggctctagagttaaattaccagcttcc-------aaggagcaggtgctgccttggaa 173
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 711 cctggctctagagttaaattaccagcttcctggggct--ggagcaggtgctgccttggaa 654
Query: 174 acaggctagagcaaggctacacaccgagggcctgcccagacaggccggtgggtgcactac 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acaggctagagcaaggctacacaccgagggcctgcccagacaggccggtgggtgcactac 594
Query: 234 agataggatcacgcttcatttgacagatatcatgactcagagcagggaaggacagcctgg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agataggatcacgcttcatttgacagatatcatgactcagagcagggaaggacagcctgg 534
Query: 294 gtcacacagcacgcctgagtctgcgtctaaggttgcaatgtccctgagactgtgggggca 353
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtcacacagcatgcctgagtctgcgtctaaggttgcaatgtccctgagactgtgggggca 474
Query: 354 gaggacagctaagaaagctgctaagggcatctaccaatacactcccgatccttcccagca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaggacagctaagaaagctgctaagggcatctaccaatacactcccgatccttcccagca 414
Query: 414 aaattcgcggccttcattccctcgttcaaagactcccattgttttggtgcgcccctcact 473
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 413 aaattcgcggccttcattccctcgttcaaagactcccattgctttggtgcgcccctcact 354
Query: 474 catatttatttaattatttacatttattttgtgt 507
||||||||||||||||||||||||||||||||||
Sbjct: 353 catatttatttaattatttacatttattttgtgt 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
