BAC Information

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BAC

Clone NameMSMg01-546D18
Chromosome4 (Build37)X (Build37)
Map Location 88,517,438 - 88,517,67596,675,659 - 96,676,332
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1
Downstream geneIfne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546D18.T7 (MSMg01no546_d18.b1)MSMg01-546D18.TJ (MSMg01no546_d18.g1)
ACCAG611107AG611108
length750743
length of high quality
(start - end)
238 (229 - 466)674 (65 - 738)
definitionCHROMAT_FILE: MSMg01no546_d18.b1 PHD_FILE: MSMg01no546_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:27 2005CHROMAT_FILE: MSMg01no546_d18.g1 PHD_FILE: MSMg01no546_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:27 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,517,438 - 88,517,675)(96,675,659 - 96,676,332)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGATG
TGCCGACCAGCTAGCAGAACAGTTAGTCACTCTAGAAAACAGGGAAACTC
AAAGTGCTGGGATAGAGGCAGCTGGCTCTCCCTGCTGGTCCTGTGGACTC
ATGGAAGTTCACAGTATTTCGTGTGTGTGTGTATGTGTGTGTGCGTATGT
ACGGGAGGGAGCGTATATGAGACTCCTCCGACACCTGGTTTTGTTTTATT
AATGCACACAGTCCCTGTTACTAACATGAATCAATTAAAGCCTGCCCAAC
TCTTTACTGGTCTGGGCCCTCCAATCTGTTGCCATTAAAGCAGAGACTTA
TTCTTTAATATCAGCCAAGAACCAGTTGACTGCTTTGGTGATGTGGGCAA
GGGGGCTTAAATGGTAGATCATAATTACTAGTGACTCATTCGCTCTATCC
TTTTAGCAAGTGTTCTAGTTTGGTTTTTAAACACTTACCAAAAACAACTT
AAGAAGAAAAAGATTTATTTCATCTTACAAGGTACACCATTATCAAGGGA
AGCAAGGGTAGGAATCGGTAGGCATGAACTGAAGCAGAAACCATGATAGA
GTGTTGCTTGCTTGCTTGCTTTCCCTGGCTTGCTCAATCTGTCTGCTTGC
TTCCTTCCTTTCTTTCTTTAAAGACATATTTGTGGCAGAAAGCTTTTTAA
TTGTTACTAAGTTTTAAGACATAAATTCTTACTTTGGGAACTAAATTTGG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACTGAAGCAGGAGGTGCTGGAGTTTCTTCACAAGA
CTGCTAAGCTAGGTATAGTGGTGAGATACATGCCTCTATTTCCTGGCAGT
CAGGAGACAGAAGCCGGGCAATCATCGCATGTTCAAGATCAGCCAGGGCT
ATGCGTACATGGTCAATTCCAAGCCAACCAGAGTTAGTAACACCACAGAA
AATAAAAGCAGGCCAATAATCCTGCTTGCTATGCCACCCTGAACAAATCT
TTTTTAACGCCCTCTATCCACAGTGTTCCCATCAGCACAGTACGTTTGGA
TCTAAATGCCTTCTAAGAAATCTGGCAGTGTTTGTATTCCAGAACCTTCT
ATAAGAATGCTCTGAGTTTGTGCTTTAGACAGTGACAGTTGTTTTTCTGT
ACTAATGGACTGTGGGAGTCAGAATAACCTTGGAGGCGAGCACTAAAAGC
ACCCTGGAAACCAAGGCCGGCAGCTCATTGTTCTGATCTAGATACTTGCT
TTGAGTGGTACCGTCCCTATTTCCCAGCTTTCTCTCTCCCTACCTCTAGC
ATACCTCCCCACCTGGGTTCCAGAGACCTCCTTGCTCTGCCTGGGACATA
GCTATCTCCCTCCTGCATCTAGCACCTTCACAGAAGTGAACATAGCTATC
TCCCTTGTGCATCTAGCACCTTCACAGAAGTGACTCCGCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_d18.b1 MSMg01no546_d18.b1 CHROMAT_FILE:
MSMg01no546_d18.b1 PHD_FILE: MSMg01no546_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:27 2005
         (238 letters)



>mm_chr4_88517238_88517875
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgacacctggttttgttttattaatgcacacagtccctgttactaacatgaatcaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgacacctggttttgttttattaatgcacacagtccctgttactaacatgaatcaattaa 379

                                                                       
Query: 61  agcctgcccaactctttactggtctgggccctccaatctgttgccattaaagcagagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agcctgcccaactctttactggtctgggccctccaatctgttgccattaaagcagagact 319

                                                                       
Query: 121 tattctttaatatcagccaagaaccagttgactgctttggtgatgtgggcaagggggctt 180
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 318 tattctttaatatcaaccaagaaccagttgactgctttggtgatatgggcaagggggctt 259

                                                                     
Query: 181 aaatggtagatcataattactagtgactcattcgctctatccttttagcaagtgttct 238
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 aaatggtaggtcataattactagtgactcattcgctctatctttttagcaagtgttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no546_d18.g1 MSMg01no546_d18.g1 CHROMAT_FILE:
MSMg01no546_d18.g1 PHD_FILE: MSMg01no546_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:27 2005
         (674 letters)



>mm_chrX_96675459_96676532
          Length = 1074

 Score = 1288 bits (666), Expect = 0.0
 Identities = 672/674 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgaagcaggaggtgctggagtttcttcacaagactgctaagctaggtatagtggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgaagcaggaggtgctggagtttcttcacaagactgctaagctaggtatagtggtga 260

                                                                       
Query: 61  gatacatgcctctatttcctggcagtcaggagacagaagccgggcaatcatcgcatgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatacatgcctctatttcctggcagtcaggagacagaagccgggcaatcatcgcatgttc 320

                                                                       
Query: 121 aagatcagccagggctatgcgtacatggtcaattccaagccaaccagagttagtaacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatcagccagggctatgcgtacatggtcaattccaagccaaccagagttagtaacacc 380

                                                                       
Query: 181 acagaaaataaaagcaggccaataatcctgcttgctatgccaccctgaacaaatcttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaaaataaaagcaggccaataatcctgcttgctatgccaccctgaacaaatcttttt 440

                                                                       
Query: 241 taacgccctctatccacagtgttcccatcagcacagtacgtttggatctaaatgccttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacgccctctatccacagtgttcccatcagcacagtacgtttggatctaaatgccttct 500

                                                                       
Query: 301 aagaaatctggcagtgtttgtattccagaaccttctataagaatgctctgagtttgtgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaatctggcagtgtttgtattccagaaccttctataagaatgctctgagtttgtgct 560

                                                                       
Query: 361 ttagacagtgacagttgtttttctgtactaatggactgtgggagtcagaataaccttgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagacagtgacagttgtttttctgtactaatggactgtgggagtcagaataaccttgga 620

                                                                       
Query: 421 ggcgagcactaaaagcaccctggaaaccaaggccggcagctcattgttctgatctagata 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcgagcactaaaagcaccctggaaaccaaggccggcagctcattgttctgatctagata 680

                                                                       
Query: 481 cttgctttgagtggtaccgtccctatttcccagctttctctctccctacctctagcatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgctttgagtggtaccgtccctatttcccagctttctctctccctacctctagcatac 740

                                                                       
Query: 541 ctccccacctgggttccagagacctccttgctctgcctgggacatagctatctccctcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccccacctgggttccagagacctccttgctctgcctgggacatagctatctccctcct 800

                                                                       
Query: 601 gcatctagcaccttcacagaagtgaacatagctatctcccttgtgcatctagcaccttca 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 801 gcatctagcaccttcacagaagtgaacatagttatctcccttgtgcatctagcaccttca 860

                         
Query: 661 cagaagtgactccg 674
           ||||||||||||||
Sbjct: 861 cagaagtgactccg 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)