BAC Information

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BAC

Clone NameMSMg01-546P14
Chromosome4 (Build37)
Map Location 129,711,192 - 129,711,856
singlet/doubletsinglet
Overlap genenone
Upstream geneIbrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2
Downstream geneCol16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546P14.T7 (MSMg01no546_p14.b1)MSMg01-546P14.TJ (MSMg01no546_p14.g1)
ACCAG611671AG611672
length755739
length of high quality
(start - end)		669 (35 - 703)595 (68 - 662)
definitionCHROMAT_FILE: MSMg01no546_p14.b1 PHD_FILE: MSMg01no546_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:27 2005CHROMAT_FILE: MSMg01no546_p14.g1 PHD_FILE: MSMg01no546_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTTT
CCTCAATGGAGTCAAAAAGTCAAGTCTGTTTCAGCGCTATACACAAGGGC
GTCCCTATAGCCTTGCAAATAAACTAACACTTAATCCCCTCTCCTAGCTC
ACAAAGTCCCCTCACCCTCACAGCCTTGTCTCTGCAACCCACCCTCCGTG
TGGGCTCCTCTCCAGCAAACAGCGTTATTTGTAATTCTCCCAAGCTGCCA
GGTTGCTTCATGCCTCCATGCCTTTGCTCATGCCGCACCTCCGCCTCTGG
TGCCCTTTCCCCTCTCTCTGCCTGCTGAGCTTTCAATTAGTGTAAGTTCA
GCGCAAGTCTTCCCTTCCTGGTCTTGTCTGACACTCTCCCCTTCCCTGCG
AGGCAGAACAGACCCCTCCTGCTCTGGAACCGATTGCTCCTAGCTACGTT
TGTCTTCTCCCGAGGCTGTATCCCAGACTCCTCTGGTGTAGCAAGACACC
TGTGCCCAGCATCGTAAAAAAATGGCTTTCTGACCCCCCCCCTCCACACA
CACACACACACACACACACACCTTGGGTTAGTGGGTGTGACCTCAGCATC
CCTTCCAGCCTCCGTTTCCCTCTCTCTCACAAAGGAGAAATGGAACTCAA
TGGTCCCCGGGTTCCCTCCTTCTGTCATTGAGTTTGTCAGTGATGGCACA
TAAAACACAATTCGCCTGTATCCCCGCACACCAACTGAAAACAGTGCATG
TTCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGAACTAGAGTTACAGGAAGTTGTAAACTGT
CTGATGTGTGGGTGTTAGGAAACCAACCTTGTGTCCTGTGCAAGAGCAGC
CAAGAGGTTTTAACCTCTGAGTCATCTTTCCAGCCTTTTTCCTAATTTCT
TTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT
GTTTTGGTTGTTTTGGGGGGCGGGGCAGGGTCTCCCAATGTTGCTCTCAC
TGACCTGGAACTGGCTATGTAGACCTGGCTGGCCTCAAATTCAGACAGAC
CTGACTGCCTCTACTGGGATTAAAGGCACTACCATACCCATCTGTGGTGG
TTAGAATAGAAATAGCCCCCATAGATTCATGTGCTTGGAGGAGTGGGGCT
ATTAGGAGGTGTGGCCATATTGGAGGAAGTGTGTCACTGTGGAACAGGCT
TTGAAATCTCCTATGCCCAAGCTATGCCCAGTGTAGAATCCAGTCTTCTC
CTGAGTGCCTTCGGATCAATATGTAGAACTCTCCACTCCTCAATTACCAT
GTCTGCCAGCCTACTGCCGCAGCAAAGGAGACACCACTATCAAGAAGGTG
GCTTTCCCAAGATGAGGCTGTTCTATTGTACTCGAGATGTGCTGATCCCT
TGAATTTCTTCAGCTGTAGGAAATTTAAATGCATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_p14.b1 MSMg01no546_p14.b1 CHROMAT_FILE:
MSMg01no546_p14.b1 PHD_FILE: MSMg01no546_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:27 2005
         (669 letters)



>mm_chr4_129711147_129712215
          Length = 1069

 Score = 1286 bits (665), Expect = 0.0
 Identities = 665/665 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttttcctcaatggagtcaaaaagtcaagtctgtttcagcgctatacacaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gaattcacttttcctcaatggagtcaaaaagtcaagtctgtttcagcgctatacacaagg 651

                                                                       
Query: 65  gcgtccctatagccttgcaaataaactaacacttaatcccctctcctagctcacaaagtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gcgtccctatagccttgcaaataaactaacacttaatcccctctcctagctcacaaagtc 591

                                                                       
Query: 125 ccctcaccctcacagccttgtctctgcaacccaccctccgtgtgggctcctctccagcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ccctcaccctcacagccttgtctctgcaacccaccctccgtgtgggctcctctccagcaa 531

                                                                       
Query: 185 acagcgttatttgtaattctcccaagctgccaggttgcttcatgcctccatgcctttgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acagcgttatttgtaattctcccaagctgccaggttgcttcatgcctccatgcctttgct 471

                                                                       
Query: 245 catgccgcacctccgcctctggtgccctttcccctctctctgcctgctgagctttcaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 catgccgcacctccgcctctggtgccctttcccctctctctgcctgctgagctttcaatt 411

                                                                       
Query: 305 agtgtaagttcagcgcaagtcttcccttcctggtcttgtctgacactctccccttccctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agtgtaagttcagcgcaagtcttcccttcctggtcttgtctgacactctccccttccctg 351

                                                                       
Query: 365 cgaggcagaacagacccctcctgctctggaaccgattgctcctagctacgtttgtcttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cgaggcagaacagacccctcctgctctggaaccgattgctcctagctacgtttgtcttct 291

                                                                       
Query: 425 cccgaggctgtatcccagactcctctggtgtagcaagacacctgtgcccagcatcgtaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cccgaggctgtatcccagactcctctggtgtagcaagacacctgtgcccagcatcgtaaa 231

                                                                       
Query: 485 aaaatggctttctgaccccccccctccacacacacacacacacacacacacaccttgggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aaaatggctttctgaccccccccctccacacacacacacacacacacacacaccttgggt 171

                                                                       
Query: 545 tagtgggtgtgacctcagcatcccttccagcctccgtttccctctctctcacaaaggaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tagtgggtgtgacctcagcatcccttccagcctccgtttccctctctctcacaaaggaga 111

                                                                       
Query: 605 aatggaactcaatggtccccgggttccctccttctgtcattgagtttgtcagtgatggca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aatggaactcaatggtccccgggttccctccttctgtcattgagtttgtcagtgatggca 51

                
Query: 665 cataa 669
           |||||
Sbjct: 50  cataa 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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